Commit 6d9331c4 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil: release 2017.03

parent f71a40f9
This changelog concerns the algorithmic part (C++) of Vidjil.
2017-02-XX The Vidjil Team
* Better e-value estimation for D genes (core/segment.cpp) #1879
2017-03-14 The Vidjil Team
* Better support for germlines from several species (germlines/*.g) #1987 #2132
* Streamlined option -g, including filtering, removed old -i/-G options (vidjil.cpp, core/germline.cpp) #2134
* Better productivity estimation, handling in-frame stop codons (core/segment.cpp) #1824
* New experimental faster heuristic with Aho-Corasick automaton (core/automaton.hpp)
* Better productivity estimation, handling in-frame stop codons (core/segment.cpp) #2220
* Better unsegmentation causes, 'UNSEG only V/J' needs really significant V/J fragments (core/segment.cpp) #2107
* New experimental faster heuristic with Aho-Corasick automaton (core/automaton.hpp) #1366
* New option to disable window clustering (-w all) (core/windowExtractor.cpp) #1642
* Updated germline genes from IMGT/GENE-DB
* Bugs closed (json output)
* Bugs closed (json output, consensus computation, -y option) #2214 #2217 #2224 #2239
* Refactored test structure for should-vdj tests (tests/should-vdj-to-tap.py, tests/repseq_vdj.py)
* New and updated unit and functional tests
* New and updated unit and functional tests, including more solved former bugs
* Moved code to gitlab, better project management, commit messages are now linked to issues
2016-09-30 The Vidjil Team
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