Commit 6be9b962 authored by Thonier Florian's avatar Thonier Florian

fuse.py; minor renaming

Link to #3944
parent db7af3b5
Pipeline #90544 passed with stage
in 6 seconds
......@@ -1047,23 +1047,27 @@ def main():
jlist_fused = None
LISTE_D = []
LIST_AXES = ["germline", # "top", # "name"
LIST_DISTRIBUTIONS = []
LIST_AXIS = ["germline",
"seg5", "seg4", "seg3",
"lenSeq", "lenCDR3",
"lenSeqConsensus", "lenSeqAverage", "GCContent", "coverage",
"lenSeq", # "evalue", l'arrondir ?
"seg5_delRight", "seg3_delLeft", "seg4_delRight", "seg3_delLeft",
"insert_53", "insert_54", "insert_43",
#"seg5_stop", "seg3_start", "seg4_stop", "seg4_start",
"lenCDR3", # "cdr3_stop", "cdr3_start",
"productive", #"junction_start", "junction_stop",
"productive",
"rearrangement", "complete",
# "evalue", l'arrondir ?
# "cdr3_stop", "cdr3_start",
#"junction_start", "junction_stop",
#"seg5_stop", "seg3_start", "seg4_stop", "seg4_start",
# "top", # "name"
]
for axe1 in LIST_AXES:
LISTE_D.append([axe1])
for axe2 in LIST_AXES:
if axe1 != axe2:
LISTE_D.append([axe1, axe2])
for axis1 in LIST_AXIS:
LIST_DISTRIBUTIONS.append([axis1])
for axis2 in LIST_AXIS:
if axis1 != axis2:
LIST_DISTRIBUTIONS.append([axis1, axis2])
print("### fuse.py -- " + DESCRIPTION)
print()
......@@ -1152,8 +1156,8 @@ def main():
if args.distributions or args.only_disributions:
print("### Compute distributions")
jlist_fused.init_distrib(LISTE_D)
jlist_fused.compute_distribution(LISTE_D)
jlist_fused.init_distrib(LIST_DISTRIBUTIONS)
jlist_fused.compute_distribution(LIST_DISTRIBUTIONS)
if args.compress:
......
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