Commit 6b929cbe authored by Mikaël Salson's avatar Mikaël Salson

{cd,-trimmed}.should-get: Failing tests should be investigated by an expert

/cc @magiraud
parent 3c0cf6c3
......@@ -4,13 +4,13 @@ $ Load CD-sorting.fa
1:homo-sapiens/CD-sorting.fa .* 28 sequences
$ KmerSegmenter, do not map reads < 52bp
1: UNSEG too short w .* 3 .* 50.0
f1: UNSEG too short w .* 3 .* 50.0
$ KmerSegmenter, map reads and gather some reads, including a large clone
1: found 9 windows in 23 reads
1:Clone .* 13 reads
f1: found 9 windows in 23 reads
f1:Clone .* 13 reads
$ FineSegmenter, find 9 clones with CD19
9:clone-.* CD19 .* SEG
f9:clone-.* CD19 .* SEG
......@@ -4,17 +4,17 @@ $ Load CD-sorting.fa
1:homo-sapiens/CD-sorting.fa .* 28 sequences
$ KmerSegmenter, map reads
1: found 6 windows in 8 reads
f1: found 6 windows in 8 reads
$ KmerSegmenter, cluster lightly trimmed or mutated reads with original ones
2:Clone .* 2 reads
f2:Clone .* 2 reads
$ KmerSegmenter, the above clusterisation comes from coherent minimizing positions
1:read-CD4-exact-1 .* @85
1:read-CD4-exact-trimmed .* @78
f1:read-CD4-exact-1 .* @85
f1:read-CD4-exact-trimmed .* @78
$ FineSegmenter, find 3 clones with CD4 and 3 with CD19
3:clone-00.* CD4 .* SEG
f3:clone-00.* CD4 .* SEG
3:clone-00.* CD19 .* SEG
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