Commit 62805fd6 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: typo in usage

Detailed help is now in doc/algo.org.
parent 318bbdd4
......@@ -185,7 +185,7 @@ void usage(char *progname)
<< " -A reports and segments all clones (-r 0 -% 0 -z 0), to be used only on very small datasets" << endl
<< endl
<< "Fine segmentation options (second pass, see warning in doc/README)" << endl
<< "Fine segmentation options (second pass, see warning in doc/algo.org)" << endl
<< " -d segment into V(D)J components instead of VJ " << endl
<< " -m <int> minimal admissible delta between segmentation points (default: " << DEFAULT_DELTA_MIN << ") (default when -d is used: " << DEFAULT_DELTA_MIN_D << ")" << endl
<< " -M <int> maximal admissible delta between segmentation points (default: " << DEFAULT_DELTA_MAX << ") (default when -d is used: " << DEFAULT_DELTA_MAX_D << ")" << endl
......@@ -209,7 +209,7 @@ void usage(char *progname)
<< endl
<< endl
<< "Examples (see doc/README)" << endl
<< "Examples (see doc/algo.org)" << endl
<< " " << progname << " -c clones -G germline/IGH -r 5 -d data/Stanford_S22.fasta" << endl
<< " " << progname << " -c segment -G germline/IGH -d data/Stanford_S22.fasta # (only for testing)" << endl
<< " " << progname << " -c germlines data/Stanford_S22.fasta" << endl
......
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