Commit 61a9b712 authored by HERBERT Ryan's avatar HERBERT Ryan Committed by Mathieu Giraud

Packaging vidjil algo automation

Added automation scripts for building the vidjil algorithm debian
package
parent e5d01e7b
#!/bin/bash
. ./build-generic.sh
MY_PWD="$PWD"
source_files="../algo ../browser ../data ../doc ../germline ../Makefile ../tools"
dest_files="vidjil"
exec_dir="$dest_files"
copy_files -s="$source_files" -d="$dest_files"
cd "$MY_PWD/$dest_files/germline"
make
cd "$MY_PWD/$dest_files/data"
cd "$MY_PWD/$exec_dir"
bash "$MY_PWD/mkdeb"
remove_files -s="$source_files" -d="$dest_files"
exit 0
vidjil (2016.08) stable; urgency=medium
* Resolved error in package
-- Vidjil Team <team@vidjil.org> Thu, 11 Aug 2016 14:23:03 +0200
Source: vidjil
Section: misc
Priority: optional
Maintainer: Vidjil Team <team@vidjil.org>
Build-Depends: debhelper (>=9)
Standards-Version: 3.9.7
Homepage: http://www.vidjil.org
#Vcs-Git: git://anonscm.debian.org/collab-maint/vidjil.git
#Vcs-Browser: https://anonscm.debian.org/cgit/collab-maint/vidjil.git
Package: vidjil
Architecture: all
Depends: vidjil-germline (>=2016.08), zlib1g-dev, libstdc++6, ${misc:Depends}
Description: Identify majority lymphocyte clones from fasta
Vidjil parses a fasta or fastq file in order to identify
the major lymphocyte clones in an effort to aid in diagnosis
and follow-up of leukaemia patients
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: vidjil
Source: <ur://www.vidjil.org/releases/vidjil-latest.tgz>
Files: *
Copyright: 2016 Vidjil Team <team@vidjil.org>
License: GPL-3.0+
Files: debian/*
Copyright: 2016 Vidjil Team <team@vidjil.org>
License: GPL-3.0+
License: GPL-3.0+
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
.
This package is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
You should have received a copy of the GNU General Public License
along with this program. If not, see <https://www.gnu.org/licenses/>.
.
On Debian systems, the complete text of the GNU General
Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
# Please also look if there are files or directories which have a
# different copyright/license attached and list them here.
# Please avoid picking licenses with terms that are more restrictive than the
# packaged work, as it may make Debian's contributions unacceptable upstream.
#!/usr/bin/make -f
# See debhelper(7) (uncomment to enable)
# output every command that modifies files on the build system.
#export DH_VERBOSE = 1
# see FEATURE AREAS in dpkg-buildflags(1)
#export DEB_BUILD_MAINT_OPTIONS = hardening=+all
# see ENVIRONMENT in dpkg-buildflags(1)
# package maintainers to append CFLAGS
#export DEB_CFLAGS_MAINT_APPEND = -Wall -pedantic
# package maintainers to append LDFLAGS
#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
%:
dh $@
# dh_make generated override targets
# This is example for Cmake (See https://bugs.debian.org/641051 )
#override_dh_auto_configure:
# dh_auto_configure -- # -DCMAKE_LIBRARY_PATH=$(DEB_HOST_MULTIARCH)
README.source
README.Debian
README
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