Commit 5fd950ab authored by Mathieu Giraud's avatar Mathieu Giraud

core/output.cpp: `duplicate_count`

See #3590.
parent dfda06d3
......@@ -153,7 +153,7 @@ map <string, string> CloneOutputAIRR::fields()
map <string, string> fields;
fields["locus"] = get("germline");
fields["consensus_count"] = string_of_int(reads());
fields["duplicate_count"] = string_of_int(reads());
fields["sequence_id"] = get("id");
fields["clone_id"] = get("id");
......@@ -177,7 +177,7 @@ void SampleOutputAIRR::out(ostream &s)
{
vector <string> fields = {
"locus",
"consensus_count",
"duplicate_count",
"v_call", "d_call", "j_call",
"sequence_id",
"sequence",
......
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