Commit 5f55ad99 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/locus.md: vidjil, some updates

parent f6a062ab
# Analyzed human locus
The Vidjil web application displays multi-locus data, as long as this information
# Analyzed human immune recombinations in Vidjil
Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes.
It was designed to analyze all the common V(D)J recombinations,
even the incomplete/special recombinations occuring during the hematopoeisis.
In particular, Vidjil analyzes all the human recombinations
targeted by the EuroClonality-NGS (2019) and the EuroClonality/BIOMED-2 (2003) primer sets.
The Vidjil web application displays these recombinations on several loci,
as long as this information
is provided in the `.vidjil` file computed by the analysis program.
Vidjil-algo currently analyzes the following locus,
Vidjil-algo currently analyzes the following recombinations,
selecting the best locus for each read.
The configuration of analyzed locus is done in the `germline/homo-sapiens.g` preset.
The configuration of analyzed recombinations is done in the `germline/homo-sapiens.g` preset.
| | | complete recombinations | | incomplete/special recombinations |
| -------------------- | ------- | ---------------------------------------------- | --------- | --------------------------------- |
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment