Commit 56f3414f authored by Mathieu Giraud's avatar Mathieu Giraud

doc/credits.md: converted from doc/credits.org

parent 0d616c9e
#+TITLE: Vidjil credits
Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes,
developed by the Bonsai bioinformatics lab, at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille.
Contact: Mathieu Giraud and Mikaël Salson <contact@vidjil.org>
Contact: Mathieu Giraud and Mikaël Salson \<contact@vidjil.org\>
# Vidjil core development
- Mathieu Giraud, 2011-2017
- Mikaël Salson, 2011-2017
- Marc Duez, 2012-2016
- Tatiana Rocher, 2014-2017
- Florian Thonier, 2015-2017
- Ryan Herbert, 2015-2017
- Aurélien Béliard, 2016-2017
# Other contributors
* Vidjil core development
- Mathieu Giraud, 2011-2017
- Mikaël Salson, 2011-2017
- Marc Duez, 2012-2016
- Tatiana Rocher, 2014-2017
- Florian Thonier, 2015-2017
- Ryan Herbert, 2015-2017
- Aurélien Béliard, 2016-2017
- David Chatel, 2011-2012
- Antonin Carette, 2014
- Loïc Breton and Jordan Gilliot, 2014
- François Dubiez, 2015-2016
- Amina Boussalia and Fabien Fache, 2016
- Eddy El Khatib and Nicolas Berveglieri, 2017
- Téo Vasseur, 2017
* Other contributors
- David Chatel, 2011-2012
- Antonin Carette, 2014
- Loïc Breton and Jordan Gilliot, 2014
- François Dubiez, 2015-2016
- Amina Boussalia and Fabien Fache, 2016
- Eddy El Khatib and Nicolas Berveglieri, 2017
- Téo Vasseur, 2017
# .should-vdj.fa tests with curated V(D)J designations
* .should-vdj.fa tests with curated V(D)J designations
- Yann Ferret (CHRU Lille), 2014-2015
- Florian Thonier (Inserm, Paris Necker), 2015-2016
- Yann Ferret (CHRU Lille), 2014-2015
- Florian Thonier (Inserm, Paris Necker), 2015-2016
* Acknowledgements
# Acknowledgements
We thank all our users, collaborators and colleagues who provided feedback on Vidjil and proposed new ideas.
Our special thanks go to:
- Marine Armand
- Jack Bartram
- Aurélie Caillault
- Yann Ferret
- Alice Fievet
- Martin Figeac
- Nathalie Grardel
- Michaela Kotrová
- Claude Preudhomme
- Shéhérazade Sebda
- Marine Armand
- Jack Bartram
- Aurélie Caillault
- Yann Ferret
- Alice Fievet
- Martin Figeac
- Nathalie Grardel
- Michaela Kotrová
- Claude Preudhomme
- Shéhérazade Sebda
Vidjil is developed in collaboration or in connection with the following groups:
- department of Hematology of CHRU Lille
- Functional and Structural Genomic Platform (U. Lille 2, IFR-114, IRCL)
- Institut Necker Enfants Malades, Paris
- EuroClonality-NGS working group
* Funding
- department of Hematology of CHRU Lille
- Functional and Structural Genomic Platform (U. Lille 2, IFR-114, IRCL)
- Institut Necker Enfants Malades, Paris
- EuroClonality-NGS working group
# Funding
The development of Vidjil is funded by:
- Région Nord-Pas-de-Calais/Hauts-de-France, 2012-2017
- Université Lille 1, 2014-2017
- SIRIC ONCOLille (Grant INCa-DGOS-Inserm 6041), 2014-2017
- Inria Lille, 2015-2017
- InCA, 2016-2017
* Reference
- Région Nord-Pas-de-Calais/Hauts-de-France, 2012-2017
- Université Lille 1, 2014-2017
- SIRIC ONCOLille (Grant INCa-DGOS-Inserm 6041), 2014-2017
- Inria Lille, 2015-2017
- InCA, 2016-2017
# Reference
Marc Duez et al.,
“Vidjil: A web platform for analysis of high-throughput repertoire sequencing”,
PLOS ONE 2016, 11(11):e0166126
http://dx.doi.org/10.1371/journal.pone.0166126
<http://dx.doi.org/10.1371/journal.pone.0166126>
Mathieu Giraud, Mikaël Salson, et al.,
"Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing",
BMC Genomics 2014, 15:409
http://dx.doi.org/10.1186/1471-2164-15-409
<http://dx.doi.org/10.1186/1471-2164-15-409>
......@@ -12,6 +12,7 @@ pages:
- locus and recombinations: locus.md
- vidjil-algo: vidjil-algo.md
- .vidjil file format: vidjil-format.md
- credits: credits.md
extra_css:
- mkdocs-extra.css
......
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