Commit 546e9193 authored by Mathieu Giraud's avatar Mathieu Giraud Committed by Vidjil Team

germline.cpp: testing all TR/IG complete systems with -g

parent 4ff24bde
......@@ -143,6 +143,28 @@ void MultiGermline::build_default_set(string path)
germline->new_index("######-######");
germlines.push_back(germline);
germline = new Germline("TRA", 'A', path + "/TRAV.fa", "", path + "/TRAJ.fa", -10, 20);
germline->new_index("#######-######");
germlines.push_back(germline);
germline = new Germline("TRB", 'B', path + "/TRBV.fa", path + "/TRBD.fa", path + "/TRBJ.fa", 0, 80);
germline->new_index("######-######");
germlines.push_back(germline);
germline = new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa", path + "/TRDJ.fa", 0, 80);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("IGK", 'K', path + "/IGKV.fa", "", path + "/IGKJ.fa", -10, 20);
germline->new_index("#####-#####");
germlines.push_back(germline);
germline = new Germline("IGL", 'L', path + "/IGLV.fa", "", path + "/IGLJ.fa", -10, 20);
germline->new_index("#####-#####");
germlines.push_back(germline);
}
......
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