Commit 4800252e authored by Mathieu Giraud's avatar Mathieu Giraud

doc: recombinations

parent a4efbf7b
......@@ -173,7 +173,7 @@ You can run the tests with the following commands:
#+BEGIN_SRC sh
make data
# get IGH rearrangements from a single individual, as described in:
# get IGH recombinations from a single individual, as described in:
# Boyd, S. D., and al. Individual variation in the germline Ig gene
# repertoire inferred from variable region gene rearrangements. J
# Immunol, 184(12), 6986–92.
......
......@@ -26,7 +26,7 @@ The Vidjil browser runs in any modern browser. It has been successfully tested o
** The .vidjil files
The vidjil browser displays =.vidjil= files that summarize the V(D)J
rearrangements and the sequences found in a run.
recombinations and the sequences found in a run.
The easiest way to get these files is to [[http://rbx.vidjil.org/browser][request an account]] on the Vidjil server.
You will then be able to upload,
......@@ -129,7 +129,7 @@ The time graph is hidden with there is only one timepoint.
To further analyze a set of clones sharing a same V and J, it is often useful
to focus on the clones, then to display them ones according to either their “clone length”
or their “N length” (that is N1-D-N2 in the case of VDJ rearrangements)
or their “N length” (that is N1-D-N2 in the case of VDJ recombinations)
** The aligner (bottom panel)
......
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