Commit 440b5a25 authored by Mathieu Giraud's avatar Mathieu Giraud

algo.org: better help for '-l'

parent 080ed75a
......@@ -222,10 +222,16 @@ produce large file and takes huge computation times.
** Force to follow some sequences
Vidjil allows to specify a list of windows that must be followed
(even if those windows are 'rare', below the =-r/-R/-%= thresholds).
The parameter =-l= is made for providing such a list in a file following
the following format: window label (separed by one space)
(even if those windows are 'rare', below the =-r/-%= thresholds).
The parameter =-l= is made for providing such a list in a file giving
one window by line like in the following example:
#+BEGIN_EXAMPLE
TGTGCGAGAGATGGACGGGATACGTAAAACGACATATGGTTCGGGGTTTGGTGCTTTTGA my-clone-1
TGTGCGAGAGATGGACGGAATACGTTAAACGACATATGGTTCGGGGTATGGTGCTTTTGA my-clone-2 foo
#+END_EXAMPLE
Windows and labels must be separed by one space.
The first column of the file is the window to be followed
while the remaining columns consist of the window's label.
In Vidjil output, the labels are output alongside their windows.
......
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