Commit 42dfd8c9 authored by Mathieu Giraud's avatar Mathieu Giraud

repseq_vdj.py: actual IgReC output has also one locus field

parent a4366d74
Pipeline #86455 passed with stage
in 5 seconds
......@@ -102,7 +102,7 @@ class Result(VDJ_Formatter):
### IgReC
IGREC_LABELS = [
'Read id',
'Read id', 'locus',
'V id', 'V start', 'V end', 'V score',
'J id', 'J start', 'J end', 'J score',
]
......@@ -110,7 +110,7 @@ IGREC_LABELS = [
class IgReC_Result(Result):
r'''
>>> lig = '\t'.join(['blabli4577', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
>>> lig = '\t'.join(['blabli4577', 'TRB', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
>>> r = IgReC_Result(lig)
>>> r['Read id']
......
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