Commit 41096892 authored by Mikael Salson's avatar Mikael Salson Committed by Mathieu Giraud

germline/: reindent *.g files

parent 94f44633
{ {
"species": "Homo sapiens", "species": "Homo sapiens",
"species_taxon_id": 9606, "species_taxon_id": 9606,
"systems": {
"TRA": { "systems": {
"shortcut": "A",
"color" : "#268bd2",
"description": "Human T-cell receptor, alpha locus (14q11.2)",
"recombinations": [ {
"5": ["TRAV.fa"],
"3": ["TRAJ.fa"]
} ],
"parameters": {
"seed": "13s"
}
},
"TRB": { "TRA": {
"shortcut": "B", "shortcut": "A",
"color" : "#cb4b16", "color" : "#268bd2",
"description": "Human T-cell receptor, beta locus (7q34)", "description": "Human T-cell receptor, alpha locus (14q11.2)",
"recombinations": [ { "recombinations": [ {
"5": ["TRBV.fa"], "5": ["TRAV.fa"],
"4": ["TRBD.fa"], "3": ["TRAJ.fa"]
"3": ["TRBJ.fa"] } ],
} ], "parameters": {
"parameters": { "seed": "13s"
"seed": "12s" }
} },
},
"TRB+": {
"shortcut": "b",
"color" : "#eb6b36",
"description": "Human T-cell receptor, beta locus (7q34), incomplete Db-Jb recombinations",
"follows": "TRB",
"recombinations": [ {
"5": ["TRBD_upstream.fa"],
"3": ["TRBJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
},
"TRG": {
"shortcut": "G",
"color" : "#dc322f",
"description": "Human T-cell receptor, gamma locus (7p14)",
"recombinations": [ {
"5": ["TRGV.fa"],
"3": ["TRGJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
},
"TRD": { "TRB": {
"shortcut": "D", "shortcut": "B",
"color" : "#b58900", "color" : "#cb4b16",
"description": "Human T-cell receptor, delta locus (14q11.2)", "description": "Human T-cell receptor, beta locus (7q34)",
"recombinations": [ { "recombinations": [ {
"5": ["TRDV.fa"], "5": ["TRBV.fa"],
"4": ["TRDD.fa"], "4": ["TRBD.fa"],
"3": ["TRDJ.fa"] "3": ["TRBJ.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "10s" "seed": "12s"
} }
}, },
"TRB+": {
"shortcut": "b",
"color" : "#eb6b36",
"description": "Human T-cell receptor, beta locus (7q34), incomplete Db-Jb recombinations",
"follows": "TRB",
"recombinations": [ {
"5": ["TRBD_upstream.fa"],
"3": ["TRBJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
},
"TRA+D": { "TRG": {
"shortcut": "a", "shortcut": "G",
"color" : "#46abf2", "color" : "#dc322f",
"description": "Human T-cell receptor, alpha/delta locus (14q11.2)", "description": "Human T-cell receptor, gamma locus (7p14)",
"recombinations": [ { "recombinations": [ {
"5": ["TRDV.fa"], "5": ["TRGV.fa"],
"4": ["TRDD.fa"], "3": ["TRGJ.fa"]
"3": ["TRAJ.fa"] } ],
}, { "parameters": {
"5": ["TRDD_upstream.fa"], "seed": "10s"
"3": ["TRAJ.fa"] }
} ], },
"parameters": {
"seed": "13s"
}
},
"TRD+": { "TRD": {
"shortcut": "d", "shortcut": "D",
"color" : "#d5a920", "color" : "#b58900",
"description": "Human T-cell receptor, delta locus (14q11.2), incomplete Dd2-Dd3 recombinations", "description": "Human T-cell receptor, delta locus (14q11.2)",
"follows": "TRD", "recombinations": [ {
"recombinations": [ { "5": ["TRDV.fa"],
"5": ["TRDV.fa"], "4": ["TRDD.fa"],
"3": ["TRDD3_downstream.fa"] "3": ["TRDJ.fa"]
}, { } ],
"5": ["TRDD2_upstream.fa"], "parameters": {
"4": ["TRDD.fa"], "seed": "10s"
"3": ["TRDJ.fa"] }
}, { },
"5": ["TRDD2_upstream.fa"], "TRA+D": {
"3": ["TRDD3_downstream.fa"] "shortcut": "a",
} ], "color" : "#46abf2",
"parameters": { "description": "Human T-cell receptor, alpha/delta locus (14q11.2)",
"seed": "9s" "recombinations": [ {
} "5": ["TRDV.fa"],
}, "4": ["TRDD.fa"],
"3": ["TRAJ.fa"]
}, {
"5": ["TRDD_upstream.fa"],
"3": ["TRAJ.fa"]
} ],
"parameters": {
"seed": "13s"
}
},
"TRD+": {
"shortcut": "d",
"color" : "#d5a920",
"description": "Human T-cell receptor, delta locus (14q11.2), incomplete Dd2-Dd3 recombinations",
"follows": "TRD",
"recombinations": [ {
"5": ["TRDV.fa"],
"3": ["TRDD3_downstream.fa"]
}, {
"5": ["TRDD2_upstream.fa"],
"4": ["TRDD.fa"],
"3": ["TRDJ.fa"]
}, {
"5": ["TRDD2_upstream.fa"],
"3": ["TRDD3_downstream.fa"]
} ],
"parameters": {
"seed": "9s"
}
},
"IGH": { "IGH": {
"shortcut": "H", "shortcut": "H",
"color" : "#6c71c4", "color" : "#6c71c4",
"description": "Human immunoglobulin, heavy locus (14q32.33)", "description": "Human immunoglobulin, heavy locus (14q32.33)",
"recombinations": [ { "recombinations": [ {
"5": ["IGHV.fa"], "5": ["IGHV.fa"],
"4": ["IGHD.fa"], "4": ["IGHD.fa"],
"3": ["IGHJ.fa"] "3": ["IGHJ.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "12s" "seed": "12s"
} }
}, },
"IGH+": { "IGH+": {
"shortcut": "h", "shortcut": "h",
"color" : "#8c91e4", "color" : "#8c91e4",
"description": "Human immunoglobulin, heavy locus (14q32.33), incomplete Dh-Jh recombinations", "description": "Human immunoglobulin, heavy locus (14q32.33), incomplete Dh-Jh recombinations",
"follows": "IGH", "follows": "IGH",
"recombinations": [ { "recombinations": [ {
"5": ["IGHD_upstream.fa"], "5": ["IGHD_upstream.fa"],
"3": ["IGHJ.fa"] "3": ["IGHJ.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "12s" "seed": "12s"
} }
}, },
"IGK": { "IGK": {
"shortcut": "K", "shortcut": "K",
"color" : "#2aa198", "color" : "#2aa198",
"description": "Human immunoglobulin, kappa locus (2p11.2)", "description": "Human immunoglobulin, kappa locus (2p11.2)",
"recombinations": [ { "recombinations": [ {
"5": ["IGKV.fa"], "5": ["IGKV.fa"],
"3": ["IGKJ.fa"] "3": ["IGKJ.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "10s" "seed": "10s"
} }
}, },
"IGK+": { "IGK+": {
"shortcut": "k", "shortcut": "k",
"color" : "#4ac1a8", "color" : "#4ac1a8",
"description": "Human immunoglobulin, kappa locus (2p11.2), Vk-KDE and Intron-KDE recombinations", "description": "Human immunoglobulin, kappa locus (2p11.2), Vk-KDE and Intron-KDE recombinations",
"follows": "IGK", "follows": "IGK",
"recombinations": [ { "recombinations": [ {
"5": ["IGKV.fa", "IGK-INTRON.fa"], "5": ["IGKV.fa", "IGK-INTRON.fa"],
"3": ["IGK-KDE.fa"] "3": ["IGK-KDE.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "10s" "seed": "10s"
} }
}, },
"IGL": { "IGL": {
"shortcut": "L", "shortcut": "L",
"color" : "#d33682", "color" : "#d33682",
"description": "Human immunoglobulin, lambda locus (22q11.2)", "description": "Human immunoglobulin, lambda locus (22q11.2)",
"recombinations": [ { "recombinations": [ {
"5": ["IGLV.fa"], "5": ["IGLV.fa"],
"3": ["IGLJ.fa"] "3": ["IGLJ.fa"]
} ], } ],
"parameters": { "parameters": {
"seed": "10s" "seed": "10s"
}
} }
} }
}
} }
{ {
"species": "Homo sapiens", "species": "Homo sapiens",
"species_taxon_id": 9606, "species_taxon_id": 9606,
"systems": { "systems": {
"IgVC": { "IgVC": {
"shortcut": "C", "shortcut": "C",
"color" : "#6c71c4", "color" : "#6c71c4",
"description": "Human immunoglobulin, heavy locus (14q32.33), with constant heavy chains", "description": "Human immunoglobulin, heavy locus (14q32.33), with constant heavy chains",
"recombinations": [ { "recombinations": [ {
"5": ["IGHV.fa"], "5": ["IGHV.fa"],
"4": ["IGHJ.fa"], "4": ["IGHJ.fa"],
"3": ["IGHC=M.fa", "3": ["IGHC=M.fa",
"IGHC=D.fa", "IGHC=D.fa",
"IGHC=G3.fa", "IGHC=G3.fa",
"IGHC=G1.fa", "IGHC=G1.fa",
"IGHC=A1.fa", "IGHC=A1.fa",
"IGHC=G2.fa", "IGHC=G2.fa",
"IGHC=G4.fa", "IGHC=G4.fa",
"IGHC=E.fa", "IGHC=E.fa",
"IGHC=A2.fa", "IGHC=A2.fa",
"IGHC=GP.fa" "IGHC=GP.fa"
] ]
} ], } ],
"parameters": { "parameters": {
"seed": "12s" "seed": "12s"
} }
}, },
"IgJC": { "IgJC": {
"shortcut": "c", "shortcut": "c",
"color" : "#8c91e4", "color" : "#8c91e4",
"description": "Human immunoglobulin, heavy locus (14q32.33), with constant heavy chains", "description": "Human immunoglobulin, heavy locus (14q32.33), with constant heavy chains",
"recombinations": [ { "recombinations": [ {
"5": ["IGHJ.fa"], "5": ["IGHJ.fa"],
"3": ["IGHC=M.fa", "3": ["IGHC=M.fa",
"IGHC=D.fa", "IGHC=D.fa",
"IGHC=G3.fa", "IGHC=G3.fa",
"IGHC=G1.fa", "IGHC=G1.fa",
"IGHC=A1.fa", "IGHC=A1.fa",
"IGHC=G2.fa", "IGHC=G2.fa",
"IGHC=G4.fa", "IGHC=G4.fa",
"IGHC=E.fa", "IGHC=E.fa",
"IGHC=A2.fa", "IGHC=A2.fa",
"IGHC=GP.fa" "IGHC=GP.fa"
] ]
} ], } ],
"parameters": { "parameters": {
"seed": "12s" "seed": "12s"
}
} }
} }
}
} }
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