Commit 41071da8 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/vidjil-algo.md: details

parent 0a91cec7
...@@ -143,6 +143,10 @@ apt-get update ...@@ -143,6 +143,10 @@ apt-get update
apt-get install -t jessie g++-4.8 valgrind apt-get install -t jessie g++-4.8 valgrind
``` ```
### Ubuntu 16.04 LTS, Ubuntu 18.04 LTS
Recent versions of `g++` are included.
### Ubuntu 14.04 LTS ### Ubuntu 14.04 LTS
``` bash ``` bash
...@@ -207,13 +211,13 @@ make LDFLAGS='-stdlib=libc++' ### OS X Mavericks ...@@ -207,13 +211,13 @@ make LDFLAGS='-stdlib=libc++' ### OS X Mavericks
You can run the tests with the following commands: You can run the tests with the following commands:
``` bash ``` bash
make -C src/tests/data make -C algo/tests/data
# get IGH recombinations from a single individual, as described in: # get IGH recombinations from a single individual, as described in:
# Boyd, S. D., and al. Individual variation in the germline Ig gene # Boyd, S. D., and al. Individual variation in the germline Ig gene
# repertoire inferred from variable region gene rearrangements. J # repertoire inferred from variable region gene rearrangements. J
# Immunol, 184(12), 6986–92. # Immunol, 184(12), 6986–92.
make -C src test # run self-tests (can take 5 to 60 minutes) make -C algo test # run self-tests (can take 5 to 60 minutes)
``` ```
# Input and parameters # Input and parameters
......
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