Commit 3dacebba authored by Committed by Mathieu Giraud
windows: read must be sampled depending on the score
The sample was constituted only on the sequence length which made sense when the reads were stored depending on their length. But now the scoring function changed and we focus on quality. It does not make sense anymore to retrieve the longest reads then. We just want to have a sample of the best reads (ie. those of better quality). Using that, if we change our scoring function again, no modification will be needed. Note that the second parameter of getBestReads() is not used yet. It may be useful to prevent too bad sequences to be sampled. SequenceSampler is not used anymore. It will be removed in a future release.
Showing with 40 additions and 7 deletions