Commit 3c4d92fe authored by Mikaël Salson's avatar Mikaël Salson

Germline: Separate retrieval of data and generation of germline.js

parent d4801981
DATA=???[VDJ].fa
DATA=???[VDJ].fa IGK-INTRON.fa IGK-KDE.fa TRDD2-01.fa TRDD3-01.fa
data:
../browser/js/germline.js: $(DATA) germlines.data
python buildBrowserGermline.py $^ $@
get-data:
sh get-germline
make ../browser/js/germline.js
clean:
rm -f $(DATA)
\ No newline at end of file
rm -f $(DATA)
......@@ -8,5 +8,3 @@ wget -N http://rbx.vidjil.org/browser/germline/IGK-KDE.fa
wget -q -O - 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=M22153&rettype=fasta&retmode=text&to=42' | sed '1s/>gb\|/>gb|TRDD2*01/' > TRDD2-01.fa
wget -q -O - 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=M22152&rettype=fasta&retmode=text&from=214&to=258' | sed '1s/>gb\|/>gb|TRDD3*01/' > TRDD3-01.fa
python buildBrowserGermline.py *.fa germlines.data ../browser/js/germline.js
\ No newline at end of file
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