Commit 39553448 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil: prepare CHANGELOG for release 2015.07

parent fef80ab0
This changelog concerns the algorithmic part (C++) of Vidjil.
2015-07-XX The Vidjil Team
* New flexible parameterization of analyzed recombinations through a json file (germline/germlines.data)
* New experimental unexpected recombination analysis (-4 -e 10) (core/segment.cpp)
* New threshold for FineSegmenter VJ assignation, with at least 10 matches (core/germline.cpp)
* Streamlined handling of segmentation methods (core/germline.h, core/segment.cpp)
* Updated distance matrix computation between all clones (core/similarityMatrix.cpp)
* New nlohmann json libray to parse and write json files (lib/json.h)
* New draft developer documentation (doc/dev.org), updated help and user documentation
* New and updated unit and functional tests, bugs closed in shouldvdj tests
2015-06-05 The Vidjil Team
* New default trim option (-t 100), considering only the relevant ends of the germline genes
* Better segmentation heuristic when there are few k-mers (core/segment.cpp)
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