Commit 25f4b24a authored by Mikaël Salson's avatar Mikaël Salson

user.md: Documentation on silent mutations

parent e6aee568
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......@@ -164,7 +164,7 @@ or their “N length” (that is N1-D-N2 in the case of VDJ recombinations).
The sequence view displays nucleotide sequences from selected clones.
- See "[What is the sequence displayed for each clone ?](#what-is-the-sequence-displayed-for-each-clone)" below
- Sequences can be aligned together (“align” button), identifying substitutions, insertions and deletions.
- Sequences can be aligned together (“align” button), identifying substitutions, insertions and deletions. Silent mutations are identified, as soon as a CDR3 is detected, and represented with a double border in blue.
- You can remove sequences from the aligner (and the selection) by clicking on the “X” at the left.
- You can further analyze the sequences with IMGT/V-QUEST, IgBlast or Blast. This opens another window/tab.
- You can unselect all sequences by clicking on the background of the grid.
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