Commit 258ce68f authored by Marc Duez's avatar Marc Duez

get-germline : improve cmd order

parent 3c2fface
......@@ -3,11 +3,10 @@
cd $(dirname $0)
wget -O - http://www.imgt.org/download/GENE-DB/IMGTGENEDB-ReferenceSequences.fasta-nt-WithoutGaps-F+ORF+inframeP | python split-from-imgt.py
python buildBrowserGermline.py *.fa germlines.data ../browser/js/germline.js
wget -N http://rbx.vidjil.org/browser/germline/IGK-INTRON.fa
wget -N http://rbx.vidjil.org/browser/germline/IGK-KDE.fa
wget -q -O - 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=M22153&rettype=fasta&retmode=text&to=42' | sed '1s/>gb\|/>gb|TRDD2*01/' > TRDD2-01.fa
wget -q -O - 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=M22152&rettype=fasta&retmode=text&from=214&to=258' | sed '1s/>gb\|/>gb|TRDD3*01/' > TRDD3-01.fa
python buildBrowserGermline.py *.fa germlines.data ../browser/js/germline.js
\ No newline at end of file
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