Commit 22414ad2 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/vidjil-algo: 2018.10

Partially reverts 9402d384.
parent c91789fa
# vidjil-algo 2018.10-dev
# vidjil-algo 2018.10
**Command-line manual**
*The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Tatiana and Rayan)*
......@@ -70,8 +70,6 @@ Vidjil-algo has been successfully tested on the following platforms :
- Ubuntu 18.04 LTS
- OS X 10.9, 10.10, 10.11
Use Vidjil-algo 2018.07.2 for a wide support of these platforms.
Vidjil-algo is developed with continuous integration using systematic unit and functional testing.
The development team internally uses [Gitlab CI](http://gitlab.vidjil.org/pipelines) and [Jenkins](https://jenkins-ci.org/) for that.
......@@ -84,9 +82,7 @@ To compile Vidjil-algo, make sure:
- to be on a POSIX system ;
- to have a C++11 compiler (as `g++` 4.8 or above, `g++` 7.3 being supported, or `clang` 3.3 or above).
Note that the 2018.10-dev version of Vidjil-algo does not work with `g++` 8.0 or above and with `clang`.
Use the 2018.07.2 version for a wider support.
This version of Vidjil-algo does not work with `g++` 8.0 or above.
- to have the `zlib` installed (`zlib1g-dev` package under Debian/Ubuntu,
`zlib-devel` package under Fedora/CentOS).
......@@ -641,7 +637,7 @@ For example `-uu -X 1000` splits the unsegmented reads from the 1000 first reads
## AIRR .tsv output
Since version 2018.10-dev, vidjil-algo supports the [AIRR format](http://docs.airr-community.org/en/latest/datarep/rearrangements.html#fields).
Since version 2018.10, vidjil-algo supports the [AIRR format](http://docs.airr-community.org/en/latest/datarep/rearrangements.html#fields).
We export all required fields, some optional fields, as also some custom fields (+).
Note that Vidjil-algo is designed to efficiently gather reads from large datasets into clones.
......
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