Commit 222ee316 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil: prepare CHANGELOG for release 2016.09

parent 1a80ae76
This changelog concerns the algorithmic part (C++) of Vidjil.
2016-09-xx The Vidjil Team
* New default trim option (-t 0) for germlines, leading to better results on some special recombinations (vidjil.cpp)
* More flexible option to keep sequences of intereset (-W), accepting sequences of any size (core/windows.cpp)
* Better recognition of standard recombinations by lowering incomplete germline attractiveness (core/segment.cpp)
* Better TRD locus analysis, including Dd-Dd-Jd recombinations (data/germlines.data)
* Reduced unused similarity section of .json file output (vidjil.cpp)
* New json output with -c segment (vidjil.cpp)
* Updated help (doc/algo.org)
* New and updated unit and functional tests, updated test process
2016-08-06 The Vidjil Team
* New computation of average quality for each representative sequence, inside its window (core/representative.cpp)
* New option (-E) to set the e-value for FineSegmenter D segment detection (vidjil.cpp)
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