Commit 21a2a5f3 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/algo.org: .vdj.fa headers

parent 2493de3d
...@@ -592,11 +592,11 @@ with a > is of the following form: ...@@ -592,11 +592,11 @@ with a > is of the following form:
name sequence name (include the number of occurrences in the read set and possibly other information) name sequence name (include the number of occurrences in the read set and possibly other information)
+ strand on which the sequence is mapped + strand on which the sequence is mapped
VDJ type of segmentation (can be "VJ", "VDJ", VDJ type of segmentation (can be "VJ", "VDJ", "VDDJ", "53"...
or shorter tags such as "V" for incomplete sequences). or shorter tags such as "V" for incomplete sequences).
The following line are for "VDJ" recombinations : The following line are for "VDJ" recombinations :
startV endV start and end position of the V gene in the sequence (start at 0) startV endV start and end position of the V gene in the sequence (start at 1)
startD endD ... of the D gene ... startD endD ... of the D gene ...
startJ endJ ... of the J gene ... startJ endJ ... of the J gene ...
......
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