Commit 1f501e13 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: reword main stdout ('junction detected')

parent 77113c16
......@@ -968,7 +968,7 @@ int main (int argc, char **argv)
int nb_segmented_including_too_short = we.getNbSegmented(TOTAL_SEG_AND_WINDOW)
+ we.getNbSegmented(UNSEG_TOO_SHORT_FOR_WINDOW);
stream_segmentation_info << " ==> segmented " << nb_segmented_including_too_short << " reads"
stream_segmentation_info << " ==> junction detected in " << nb_segmented_including_too_short << " reads"
<< " (" << setprecision(3) << 100 * (float) nb_segmented_including_too_short / nb_total_reads << "%)"
<< endl ;
......@@ -977,9 +977,8 @@ int main (int argc, char **argv)
float ratio_segmented = 100 * (float) nb_segmented / nb_total_reads ;
stream_segmentation_info << " ==> found " << windowsStorage->size() << " " << w << "-windows"
<< " in " << nb_segmented << " segments"
<< " (" << setprecision(3) << ratio_segmented << "%)"
<< " inside " << nb_total_reads << " sequences" << endl ;
<< " in " << nb_segmented << " reads"
<< " (" << setprecision(3) << ratio_segmented << "% of " << nb_total_reads << " reads)" << endl ;
// warn if there are too few segmented sequences
if (ratio_segmented < WARN_PERCENT_SEGMENTED)
......
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