Commit 1e7e9f60 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil: prepare CHANGELOG for release 2017.02

parent dfd0423d
This changelog concerns the algorithmic part (C++) of Vidjil.
2017-02-XX The Vidjil Team
* Better e-value estimation for D genes (core/segment.cpp) #1879
* Better support for germlines from several species (germlines/*.g) #1987 #2132
* Streamlined option -g, including filtering, removed old -i/-G options (vidjil.cpp, core/germline.cpp) #2134
* Better productivity estimation, handling in-frame stop codons (core/segment.cpp) #1824
* New experimental faster heuristic with Aho-Corasick automaton (core/automaton.hpp)
* Updated germline genes from IMGT/GENE-DB
* Bugs closed (json output)
* Refactored test structure for should-vdj tests (tests/, tests/
* New and updated unit and functional tests
* Moved code to gitlab, better project management, commit messages are now linked to issues
2016-09-30 The Vidjil Team
* New default trim option (-t 0) for germlines, leading to better results on some special recombinations (vidjil.cpp)
* More flexible option to keep sequences of intereset (-W), accepting sequences of any size (core/windows.cpp)
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