Commit 0b8584df authored by Mathieu Giraud's avatar Mathieu Giraud

core/output.cpp: AIRR, "warnings"

parent 2673d761
......@@ -168,6 +168,8 @@ map <string, string> CloneOutputAIRR::fields()
fields["productive"] = TF_format_bool(get(KEY_SEG, "junction", "productive"));
fields["rev_comp"] = NULL_VAL;
fields["warnings"] = getWarnings();
return fields;
}
......@@ -184,6 +186,7 @@ void SampleOutputAIRR::out(ostream &s)
"junction_aa",
"junction",
"cdr3_aa",
"warnings",
"rev_comp",
"sequence_alignment",
"germline_alignment",
......
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