Commit 03fd3d22 authored by marc's avatar marc Committed by Mathieu Giraud

fuse.py: replace OR remove the obsolete similarity matrix

parent 109ba56e
......@@ -46,7 +46,7 @@ from collections import defaultdict
FUSE_VERSION = "vidjil fuse"
TOOL_SIMILARITY = "../algo/tools/similarity"
SIMILARITY_LIMIT = 1000
SIMILARITY_LIMIT = 500
GERMLINES_ORDER = ['TRA', 'TRB', 'TRG', 'TRD', 'DD', 'IGH', 'DHJH', 'IJK', 'IJL']
......@@ -752,7 +752,8 @@ def main():
jlist_fused.d["similarity"] = json.loads(out)
except OSError:
print("! failed: %s" % TOOL_SIMILARITY)
else :
jlist_fused.d["similarity"] = [];
print("### Save merged file")
jlist_fused.save_json(args.output)
......
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