Commit 00cfe3ba authored by Mikaël Salson's avatar Mikaël Salson

germline.cpp: Call the parameter trim_sequences in .g file

trim_sequences seems more understandable than max_indexing.
But well it's documented nowhere at the moment.
parent aae1d31e
......@@ -317,8 +317,8 @@ void MultiGermline::build_from_json(string path, string json_filename_and_filter
}
}
if (default_max_indexing == 0) {
if (json_parameters.count("max_indexing") > 0) {
max_indexing = json_parameters["max_indexing"];
if (json_parameters.count("trim_sequences") > 0) {
max_indexing = json_parameters["trim_sequences"];
}
}
......
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