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  • Mikaël Salson's avatar
    bug: When adding some kmers prevent the sequence being segmented · cd0d2609
    Mikaël Salson authored
    When we have few kmers at the start, the sequence will be segmented
    (because first_pos_max is at the start of the sequence).
    
    On the contrary if we add some kmers of the same locus further in the sequence
    (in our case it is TGCTCCCCTA) the sequence won't be segmented because
    first_pos_max is much larger and it is likely that having so few kmers of the
    locus in such a large sequence is obtained by chance.
    
    Clearly there is a problem with the first sequence that should not be
    segmented: maybe the evalue should not be computed from position 1 to position
    1+first_pos_max ?
    cd0d2609