credits.org 1.68 KB
Newer Older
Mikaël Salson's avatar
Mikaël Salson committed
1
#+TITLE: Vidjil credits
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes,
developed by the Bonsai bioinformatics lab, at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille.

Contact: Mathieu Giraud and Mikaël Salson <contact@vidjil.org>

* Vidjil core development
 - Mathieu Giraud, 2011-2015
 - Mikaël Salson, 2011-2015
 - Marc Duez, 2012-2015
 - Tatiana Rocher, 2014-2015
 - Florian Thonier, 2015

* Other contributors
 - David Chatel, 2011-2012
 - Antonin Carette, 2014

* .should-vdj.fa tests with curated V(D)J designations
 - Yann Ferret (CHRU Lille), 2014-2015
 - Florian Thonier (Inserm, Paris Necker), 2015

* Acknowledgements

Mikaël Salson's avatar
Mikaël Salson committed
25
We thank all our users, collaborators and colleagues who provided feedback on Vidjil and proposed new ideas.
26 27 28 29 30 31 32 33 34 35 36
Our special thanks go to:
- Marine Armand
- Jack Bartram
- Aurélie Caillault
- Yann Ferret
- Alice Fievet
- Martin Figeac
- Nathalie Grardel
- Michaela Kotrová
- Claude Preudhomme
- Shéhérazade Sebda
37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57

Vidjil is developed in collaboration or in connection with the following groups:
 - department of Hematology of CHRU Lille
 - Functional and Structural Genomic Platform (U. Lille 2, IFR-114, IRCL)
 - Institut Necker Enfants Malades, Paris
 - EuroClonality-NGS working group

* Funding

The development of Vidjil is funded by:
 - Région Nord-Pas-de-Calais, 2012-2017
 - Université Lille 1, 2014-2017
 - SIRIC ONCOLille (Grant INCa-DGOS-Inserm 6041), 2014-2016
 - Inria Lille, 2015-2017

* Reference

Mathieu Giraud, Mikaël Salson, et al.,
"Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing",
BMC Genomics 2014, 15:409
http://dx.doi.org/10.1186/1471-2164-15-409