pear_structured_log.should-get 1020 Bytes
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!LAUNCH: python ../../pear_structured_log.py -i ../data/pear_log.log -o ../data/pear_strucured.json; cat ../data/pear_strucured.json
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$ Correct number of assembled reads
1:"reads_assembled_number": 2972
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1:"reads_total_number": 3000
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$ Correct number of unassembled reads
1:"reads_not_assembled_number": 28

$ Correct information on input files used by pear
1:"assembled_reads": "demo_set.fastq.assembled.fastq", 
1:"discarded_reads": "demo_set.fastq.discarded.fastq", 
1:"unassembled_forward": "demo_set.fastq.unassembled.forward.fastq", 
1:"unassembled_reverse": "demo_set.fastq.unassembled.reverse.fastq"

$ Correct parameter return
1:"forward_file": "sequence_R1.fastq", 
1:"minimum_overlap": "10", 
1:"phred": "33", 
1:"reverse_file": "sequence_R2.fastq", 
1:"scoring_methode": "Scaled score", 
1:"version": "PEAR v0.9.10 \[May 30, 2016\]"


$ Correct nucleotides frequencies
1:"base_frequency_a": "0.269874", 
1:"base_frequency_c": "0.257653", 
1:"base_frequency_g": "0.238808", 
1:"base_frequency_t": "0.233665",