Makefile 636 Bytes
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DATA=$(wildcard ???[VDJ].fa ???[VDJ]_upstream.fa ???[VDJ]_downstream.fa {IG,TR}*=*.fa) IGK-INTRON.fa IGK-KDE.fa TRDD2_upstream.fa TRDD3_downstream.fa
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germline:
	sh get-saved-germline

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js: ../browser/js/germline.js

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../browser/js/germline.js: $(DATA) germlines.data
	python buildBrowserGermline.py $^ $@

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get-all-data: clean $(DATA)
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$(DATA):
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	sh get-germline
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	$(MAKE) js
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clean:
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	rm -f $(DATA) ../browser/js/germline.js
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diff-from-saved:
	rm -rf saved-germline
	mkdir saved-germline
	cd saved-germline ; sh ../get-saved-germline
	echo
	diff -r -u -x "*[.][^f][^a]" -x "germline*" -x "get*" -x "Makefile" -x "saved-*" saved-germline/ .