get-germline 562 Bytes
Newer Older
Mikaël Salson's avatar
Mikaël Salson committed
1 2 3
#!/bin/sh

cd $(dirname $0)
4 5
wget -N http://www.imgt.org/download/GENE-DB/IMGTGENEDB-GeneList
wget -N http://www.imgt.org/download/GENE-DB/IMGTGENEDB-ReferenceSequences.fasta-nt-WithGaps-F+ORF+inframeP
6 7
errors=$(tempfile)
python split-from-imgt.py IMGTGENEDB-ReferenceSequences.fasta-nt-WithGaps-F+ORF+inframeP IMGTGENEDB-GeneList 2> $errors
Mikaël Salson's avatar
Mikaël Salson committed
8

9
wget -O IMGT_RELEASE http://www.imgt.org/download/GENE-DB/RELEASE
10

11 12
wget -N -P homo-sapiens http://vidjil.org/germline/IGK-INTRON.fa
wget -N -P homo-sapiens http://vidjil.org/germline/IGK-KDE.fa
13 14 15

cat $errors
rm -f $errors