results-two-clones-1-2.vidjil 919 Bytes
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{ 
    "vidjil_json_version" : "2014.10",

    "samples" :  { 
	"number" : 1,
	"original_names" :  [ "/some/file" ] ,
	"run_timestamp" :  [ "2015-02-19 16:37:06" ] ,
	"producer" :  [ "vidjil dev 0cf35de (2015-02-17)" ] ,
	"log" :  [ "Some log" ],
	"commandline" :  [ "Some commandline" ]
    } ,
        
    "reads" :  { 
	"total" :  [ 2000 ] ,
	"segmented" :  [ 1000 ] ,
	"germline" :  { 
	    "IGH" :  [ 950 ] 
	} 
    } ,

    "clones" :  [  
	{ 
	    "id" : "id-1",
	    "name": "name-1",
	    "sequence" : "seq-1",

	    "reads" :  [ 800 ] ,
	    "top" : 1,
	    "germline" : "IGH"
	},
	{
	    "id" : "id-2",
	    "name" : "name-2",
	    "sequence": "seq-2",

	    "reads" :  [ 100 ] ,
	    "top" : 2,
	    "germline" : "IGH"
	} 
    ] ,

    "germlines" :  { 
	"custom" :  { 
	    "shortcut" : "X",
	    "3" :  [ "/some/IGHV.fa" ],
	    "4" :  [ "/some/IGHD.fa" ],
	    "5" :  [ "/some/IGHJ.fa" ]
	} 
    } 
 }