!REQUIRES: python $VIDJIL_DIR/tools/check_python_version.py !LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS --alternative-genes 3 -c segment -x 1 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; cat out/Stanford_S22.vidjil | python $VIDJIL_DIR/tools/format_json.py -1 $ Presence of alternative: 1: "3alt" 1: "name": "IGHJ4.02" 1: "name": "IGHJ4.01" f1: "name": "IGHJ5.01" 1: "4alt" 1: "name": "IGHD3-22.01" 1: "name": "IGHD3-10.02" 1: "name": "IGHD3-10.01" 1: "5alt" 1: "name": "IGHV3-48.01" 1: "name": "IGHV3-48.02" 1: "name": "IGHV3-48.04" $ Correct number of "name" fields (1 clone + 3*1 'best' genes + 3*3 'alternative' genes) w13:"name"