Merge branch 'feature-s/4506-healthcare-compliance-warning' into 'dev'

Healthcare-compliant servers : documentation, warnings

Closes #4506

See merge request !813
33 jobs for dev in 10 minutes and 23 seconds (queued for 14 seconds)
Status Job ID Name Coverage
  Test Tools
passed #854053
test_tools

00:00:18

 
  Test Quality
failed #854057
allowed to fail
code_quality

00:00:05

passed #854060
web
code_quality_custom

00:00:11

 
  Test Unit
passed #854066
test_algo_unit

00:03:20

passed #854072
web
test_browser_unit

00:00:49

passed #854076
web
test_server_unit

00:00:16

 
  Test Germlines
failed #854083
test_germlines

00:06:32

 
  Test Functional
skipped #854097
web
chrome-browser-functional
skipped #854091
web
ff32-browser-functional
skipped #854103
docker x86_64
ff32-server-functional
skipped #854094
web
ff45-browser-functional
skipped #854106
docker x86_64
ff45-server-functional
skipped #854100
legacy
old-chrome-browser-functional
skipped #854087
test_algo_should
 
  Test Shouldvdj
skipped #854108
test_algo_shouldvdj
 
  Test Functional External
skipped #854111
web
chrome-browser-functional-external
skipped #854109
web
ff32-browser-functional-external
skipped #854110
web
ff45-browser-functional-external
skipped #854112
legacy
old-chrome-browser-functional-external-chrome
 
  Coverage
skipped #854113
algo_coverage
 
  Valgrind Unit
skipped #854114
valgrind
algo_valgrind_unit
 
  Valgrind Functional
skipped #854115
valgrind allowed to fail manual
algo_valgrind_functional
 
  Multiple Tests
skipped #854123
cidocker allowed to fail manual
test_clang34_manual
skipped #854124
cidocker allowed to fail manual
test_clang4_manual
skipped #854125
cidocker allowed to fail manual
test_clang6_manual
skipped #854126
cidocker allowed to fail manual
test_clang7_manual
skipped #854122
cidocker allowed to fail manual
test_gcc10_manual
skipped #854116
cidocker allowed to fail manual
test_gcc48_manual
skipped #854117
cidocker allowed to fail manual
test_gcc5_manual
skipped #854118
cidocker allowed to fail manual
test_gcc6_manual
skipped #854119
cidocker allowed to fail manual
test_gcc7_manual
skipped #854120
cidocker allowed to fail manual
test_gcc8_manual
skipped #854121
cidocker allowed to fail manual
test_gcc9_manual
 
Name Stage Failure
failed
test_germlines Test Germlines

should.py --retry or should.py --retry-warned will relaunch these tests.
Makefile:3: recipe for target 'go' failed
make[1]: *** [go] Error 1
make[1]: Leaving directory '/home/gitlab-runner/builds/b8d876c1/0/vidjil/vidjil/germline/tests'
Makefile:34: recipe for target 'tests' failed
make: *** [tests] Error 2
make: Leaving directory '/home/gitlab-runner/builds/b8d876c1/0/vidjil/vidjil/germline'
ERROR: Job failed: exit status 1
failed
code_quality Test Quality
$ function propagate_env_vars() { # collapsed multi-line command
$ docker pull --quiet "$CODE_QUALITY_IMAGE"
unknown flag: --quiet
See 'docker pull --help'.
Uploading artifacts...
Runtime platform arch=386 os=linux pid=12611 revision=58272c27 version=12.7.0
WARNING: gl-code-quality-report.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1