germlines; add sus scrofa model (pig) into germline

Status Job ID Name Coverage
  Test Tools
passed #806415
test_tools

00:00:10

 
  Test Quality
failed #806416
allowed to fail
code_quality

00:00:02

 
  Test Unit
passed #806417
test_algo_unit

00:03:28

 
  Test Functional
failed #806418
test_algo_should

00:07:17

 
  Test Shouldvdj
skipped #806419
test_algo_shouldvdj
 
  Coverage
skipped #806420
algo_coverage
 
  Prepare Release
skipped #806421
allowed to fail manual
prepare_release
 
  Valgrind Unit
skipped #806422
valgrind
algo_valgrind_unit
 
  Valgrind Functional
skipped #806423
valgrind allowed to fail manual
algo_valgrind_functional
 
  Multiple Tests
skipped #806431
cidocker allowed to fail manual
test_clang34_manual
skipped #806432
cidocker allowed to fail manual
test_clang4_manual
skipped #806433
cidocker allowed to fail manual
test_clang6_manual
skipped #806434
cidocker allowed to fail manual
test_clang7_manual
skipped #806430
cidocker allowed to fail manual
test_gcc10_manual
skipped #806424
cidocker allowed to fail manual
test_gcc48_manual
skipped #806425
cidocker allowed to fail manual
test_gcc5_manual
skipped #806426
cidocker allowed to fail manual
test_gcc6_manual
skipped #806427
cidocker allowed to fail manual
test_gcc7_manual
skipped #806428
cidocker allowed to fail manual
test_gcc8_manual
skipped #806429
cidocker allowed to fail manual
test_gcc9_manual
 
  Benchmark
skipped #806436
cidocker allowed to fail manual
benchmark_algo
skipped #806435
cidocker allowed to fail manual
profiling_algo
 
Name Stage Failure
failed
test_algo_should Test Functional
make[1]: Leaving directory '/home/gitlab-runner/builds/ae9bf4d5/0/vidjil/vidjil/algo'
Makefile:212: recipe for target 'should_coverage' failed
make: *** [should_coverage] Error 2
make: Leaving directory '/home/gitlab-runner/builds/ae9bf4d5/0/vidjil/vidjil/algo'
Uploading artifacts...
Runtime platform arch=amd64 os=linux pid=9392 revision=1b659122 version=12.8.0
algo/tests/should.xml: found 1 matching files

Uploading artifacts to coordinator... ok
id=806418 responseStatus=201 Created token=Li7-d88y
ERROR: Job failed: exit status 1
failed
code_quality Test Quality
$ function propagate_env_vars() { # collapsed multi-line command
$ docker pull --quiet "$CODE_QUALITY_IMAGE"
unknown flag: --quiet
See 'docker pull --help'.
Uploading artifacts...
Runtime platform arch=386 os=linux pid=9410 revision=58272c27 version=12.7.0
WARNING: gl-code-quality-report.json: no matching files
ERROR: No files to upload
ERROR: Job failed: exit status 1