Closed
Milestone
Algo 2017.03
Milestone ID: 90
2017-03-14 The Vidjil Team
* Better support for germlines from several species (germlines/*.g) #1987 #2132
* Streamlined option -g, including filtering, removed old -i/-G options (vidjil.cpp, core/germline.cpp) #2134
* Better productivity estimation, handling in-frame stop codons (core/segment.cpp) #2220
* Better unsegmentation causes, 'UNSEG only V/J' needs really significant V/J fragments (core/segment.cpp) #2107
* New experimental faster heuristic with Aho-Corasick automaton (core/automaton.hpp) #1366
* New option to disable window clustering (-w all) (core/windowExtractor.cpp) #1642
* Updated germline genes from IMGT/GENE-DB
* Bugs closed (json output, consensus computation, -y option) #2214 #2217 #2224 #2239
* Refactored test structure for should-vdj tests (tests/should-vdj-to-tap.py, tests/repseq_vdj.py)
* New and updated unit and functional tests, including more solved former bugs
* Moved code to gitlab, better project management, commit messages are now linked to issues