diff --git a/algo/core/bam.cpp b/algo/core/bam.cpp index cdec85f5d31ef25f622908b66b07bccd503c7ae6..497177b046cafe41673c6e2331118ce18d268e87 100644 --- a/algo/core/bam.cpp +++ b/algo/core/bam.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/bioreader.cpp b/algo/core/bioreader.cpp index 1a094d6ee0a01daee22def394bdc4279ed328564..ea9ce9a966def2c1257273e4cfad6e0f2448ad67 100644 --- a/algo/core/bioreader.cpp +++ b/algo/core/bioreader.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/bioreader.hpp b/algo/core/bioreader.hpp index 32c96e86daf4b9082c16440c92cfb268f10abd85..683adbdfd39cb81745cd18a8aa195641c3dd2f6a 100644 --- a/algo/core/bioreader.hpp +++ b/algo/core/bioreader.hpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/cluster-junctions.cpp b/algo/core/cluster-junctions.cpp index 4ffa9052b766c45bd074d8db9c85ef3463bcedba..da7b0deb2b7e260fbc0e9b5ae651bfb94338d143 100644 --- a/algo/core/cluster-junctions.cpp +++ b/algo/core/cluster-junctions.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/compare-all.cpp b/algo/core/compare-all.cpp index fdfb685a2c5441e35fe037343ca405cd1c721707..092cb4b800e025411a2cf0bd272fc7ee84f61a12 100644 --- a/algo/core/compare-all.cpp +++ b/algo/core/compare-all.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/dynprog.cpp b/algo/core/dynprog.cpp index 586392aeba152b24b1d2e1ab92e48116698f7e00..7f596999e9f2ef9e575449fd9583255d3b4bea66 100644 --- a/algo/core/dynprog.cpp +++ b/algo/core/dynprog.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/fasta.cpp b/algo/core/fasta.cpp index 1a8ed7a70ddba5adbcff6daf0d5f360a4f50bf5e..288b4e79863ad52ffece1f2efff76121e5e64cc6 100644 --- a/algo/core/fasta.cpp +++ b/algo/core/fasta.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/kmeraffect.cpp b/algo/core/kmeraffect.cpp index edc0d98c6a1ab97ab21d1d0e97de040b92c04e84..235429e837a4e6e9aa62d12d4bda7537294be768 100644 --- a/algo/core/kmeraffect.cpp +++ b/algo/core/kmeraffect.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/kmerstore.cpp b/algo/core/kmerstore.cpp index 235e41408d1e42a92c11bcbc12fb1b607fbf8b86..7da0ee075f2b879226b29ef990752eafdad56fee 100644 --- a/algo/core/kmerstore.cpp +++ b/algo/core/kmerstore.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/segment.cpp b/algo/core/segment.cpp index 30a4080ad3b36be1c2acfc097708c026047a698c..7c38c7f3682cedf5fc5fad99687a6b47b905ce03 100644 --- a/algo/core/segment.cpp +++ b/algo/core/segment.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/core/similarityMatrix.cpp b/algo/core/similarityMatrix.cpp index 0a5f4eeed3549d967a47dd94043b4789549d827b..0f3d58b6f5f380c9cc546f7e725050a398ebb5d8 100644 --- a/algo/core/similarityMatrix.cpp +++ b/algo/core/similarityMatrix.cpp @@ -1,6 +1,6 @@ /* - This file is part of Vidjil - Copyright (C) 2011-2020 by VidjilNet consortium and Bonsai bioinformatics + This file is part of Vidjil-algo + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud diff --git a/algo/vidjil.cpp b/algo/vidjil.cpp index 21e3d2ef7ee1bf0c1307d3572284139e31bb6e5a..7a4727e233be448d7c3fd771337ea3e51541813a 100644 --- a/algo/vidjil.cpp +++ b/algo/vidjil.cpp @@ -1,6 +1,6 @@ /* This file is part of Vidjil-algo - Copyright (C) 2011-2021 by VidjilNet consortium and Bonsai bioinformatics + Copyright (C) 2011-2022 by VidjilNet consortium and Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille Contributors: Mathieu Giraud @@ -210,7 +210,7 @@ string string_NO_LIMIT(string s) int main (int argc, char **argv) { cout << "# " << PROGNAME << " -- V(D)J recombinations analysis " << endl - << "# Copyright (C) 2011-2021 by the Vidjil team" << endl + << "# Copyright (C) 2011-2022 by the Vidjil team" << endl << "# Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille" << endl << "# VidjilNet consortium" << endl << endl diff --git a/browser/js/autocomplete.js b/browser/js/autocomplete.js index 721446cb01169f0f6311f289594db5310812f9c7..a9200b57c0b98c16372b33b04940eead57f51478 100644 --- a/browser/js/autocomplete.js +++ b/browser/js/autocomplete.js @@ -1,6 +1,6 @@ /* This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/axis.js b/browser/js/axis.js index 4504bd43c57da99adb762f520dfd6033ad8fb094..515a7c164627d5249dc791988255e5d05d7511c1 100644 --- a/browser/js/axis.js +++ b/browser/js/axis.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2020 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/axis_conf.js b/browser/js/axis_conf.js index 7f0b8b08e04efbd7c68e47dff1dea7d24c503e25..7d8613bdfe693f386931d1648cceb6a03bf504d6 100644 --- a/browser/js/axis_conf.js +++ b/browser/js/axis_conf.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/builder.js b/browser/js/builder.js index 3cc09ef5e1dbf5533d54dfcca434fded7c266912..8ff09710b10baad639755aa0e198842671f83105 100644 --- a/browser/js/builder.js +++ b/browser/js/builder.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/clone.js b/browser/js/clone.js index 64332a38f2ded123a21773abac35766155ad2898..39afd3b1d929682d5bad00498216671c7a8f0a61 100644 --- a/browser/js/clone.js +++ b/browser/js/clone.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/com.js b/browser/js/com.js index 197425e2eed50a383ac08caea82d588df5ecd782..d2a0b5d7dd7317882ec6259f250cbcf083703586 100644 --- a/browser/js/com.js +++ b/browser/js/com.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez @@ -87,7 +87,7 @@ function Com(default_console) { BUTTON_CLOSE_POPUP, "welcome": "

Vidjil

" + - "(c) 2011-2021, The Vidjil Team: " + + "(c) 2011-2022, The Vidjil Team: " + "Aurélien Béliard, Marc Duez, Mathieu Giraud, Ryan Herbert, Mikaël Salson, Tatiana Rocher and Florian Thonier" + " – http://www.vidjil.org/" + (typeof git_sha1 !== "undefined" ? " – " + git_sha1 : "") + diff --git a/browser/js/dbscan.js b/browser/js/dbscan.js index ae968dd69355a781758a3c2c586ae587ad29ca07..0c676e17032f987530835b734d7edef6b0145d2a 100644 --- a/browser/js/dbscan.js +++ b/browser/js/dbscan.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Antonette Carin diff --git a/browser/js/germline_builder.js b/browser/js/germline_builder.js index 10238ffb58e167037fd7e017721880b9f0c4efda..1c53696326b018b8a51ec27b6d228a28b34f2725 100644 --- a/browser/js/germline_builder.js +++ b/browser/js/germline_builder.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/graph.js b/browser/js/graph.js index e0a56f4b85d4e508acf14a33eacaffd95e641aa4..f4725e63b6ca32ed25d0aeed8cd2606b57f0c0b2 100644 --- a/browser/js/graph.js +++ b/browser/js/graph.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/indexedDom.js b/browser/js/indexedDom.js index dbad1181deea68d352ef29de17d7e1b05527ea16..5172838ed95236fe029f56ab94b2ae9352517b89 100644 --- a/browser/js/indexedDom.js +++ b/browser/js/indexedDom.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/info.js b/browser/js/info.js index 1e27f238c17aa698b8a5d507551f2bb0e69dedef..cc092249d3270d51766a919bc7455666f8b8c28e 100644 --- a/browser/js/info.js +++ b/browser/js/info.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/list.js b/browser/js/list.js index c8af70d7ff6e636d96b081edddd9b5fc2df5509d..e9d80d30154739f53bda5d1563e6403ac8d23f5a 100644 --- a/browser/js/list.js +++ b/browser/js/list.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2017 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/main.js b/browser/js/main.js index a24c614b9c1bb86ee6495882634e93af72c67df8..ddd26056e4dcae419ab07ab0e4e7ff73b80b26e7 100644 --- a/browser/js/main.js +++ b/browser/js/main.js @@ -1,6 +1,6 @@ /* This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/menu.js b/browser/js/menu.js index ab57d5ecca8152dff74654af77692e37cec196d3..8eb1e06deed6daf7b9ea35bcd0446407a97c6d9a 100644 --- a/browser/js/menu.js +++ b/browser/js/menu.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/model.js b/browser/js/model.js index fac10c38362adef220269ae1f750df7b2caa1499..0a4be529592e953fcb4a327f2dd02b79ca69e3a4 100644 --- a/browser/js/model.js +++ b/browser/js/model.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/model_loader.js b/browser/js/model_loader.js index d3b9fd54cb5db4fb36256d13f1abb41429bac748..f2978ae08c4b365d89824a766bd83559ef5a9a9b 100644 --- a/browser/js/model_loader.js +++ b/browser/js/model_loader.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/scatterPlot.js b/browser/js/scatterPlot.js index 750c9e0afa2327528eea27e99605aae811003d88..a0fafd04fd544003c4ab6ff2f050c1880d6af89e 100644 --- a/browser/js/scatterPlot.js +++ b/browser/js/scatterPlot.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/scatterPlot_menu.js b/browser/js/scatterPlot_menu.js index 8b864d7c2a8e6038fd408cddbcfbbc5e1cf519a9..763b0c6b311cc569ab30b037fb92c8c94502181a 100644 --- a/browser/js/scatterPlot_menu.js +++ b/browser/js/scatterPlot_menu.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/scatterPlot_selector.js b/browser/js/scatterPlot_selector.js index e786175ccd0e97fd3997720c1eea28ceecd77744..c35b57296a464fefccb00c287506f54e01964bfd 100644 --- a/browser/js/scatterPlot_selector.js +++ b/browser/js/scatterPlot_selector.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/screen_MRD.js b/browser/js/screen_MRD.js index 14c2a8f4e9e19891525dc6e080087e0ac5f0d373..d7a6215663e766658dbaccd7db526c451f77bfb5 100644 --- a/browser/js/screen_MRD.js +++ b/browser/js/screen_MRD.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2020 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Joao Meidanis diff --git a/browser/js/shortcut.js b/browser/js/shortcut.js index 7f6c5ec43c6c499393bdbf12316a647c21e59994..f3680e3203e621b765d14b7e8ccef12c20ddeb2b 100644 --- a/browser/js/shortcut.js +++ b/browser/js/shortcut.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Antonin Carette diff --git a/browser/js/tokeniser.js b/browser/js/tokeniser.js index c5f821661b3483df8f62f87b764c3262f05bf4e2..c7bd1d42bfbd2f8a96c44fd64c3da1f28e17f7bd 100644 --- a/browser/js/tokeniser.js +++ b/browser/js/tokeniser.js @@ -1,6 +1,6 @@ /* This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/vidjil-style.js b/browser/js/vidjil-style.js index 297fa8ff6f130da2f8bdd9d460feafe2f81845c1..facc94b19d0683facc1efe751268e2d908857d5b 100644 --- a/browser/js/vidjil-style.js +++ b/browser/js/vidjil-style.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/browser/js/view.js b/browser/js/view.js index 26230cede5018ba9ee46c5ef2a4400b0a1a232f9..94539f43ee4eacab17029f17d74124f5287ca632 100644 --- a/browser/js/view.js +++ b/browser/js/view.js @@ -1,7 +1,7 @@ /* * This file is part of Vidjil , * High-throughput Analysis of V(D)J Immune Repertoire. - * Copyright (C) 2013-2017 by Bonsai bioinformatics + * Copyright (C) 2013-2022 by VidjilNet consortium and Bonsai bioinformatics * at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille * Contributors: * Marc Duez diff --git a/doc/credits.md b/doc/credits.md index 83d169d575da612e375cf2d45faac1d99f493c75..020a6d5e82a4a17da4405df2ef51f86147593075 100644 --- a/doc/credits.md +++ b/doc/credits.md @@ -8,11 +8,11 @@ Contact: [Mathieu Giraud and Mikaël Salson](mailto:contact@vidjil.org) ## Vidjil core development - - Mathieu Giraud, 2011-2021 - - Mikaël Salson, 2011-2021 - - Marc Duez, 2012-2016, 2019-2021 + - Mathieu Giraud, 2011-2022 + - Mikaël Salson, 2011-2022 + - Marc Duez, 2012-2016, 2019-2022 - Tatiana Rocher, 2014-2017 - - Florian Thonier, 2015-2021 + - Florian Thonier, 2015-2022 - Ryan Herbert, 2015-2020 - Aurélien Béliard, 2016-2017 @@ -65,7 +65,7 @@ The development of Vidjil is funded by: - SIRIC ONCOLille (Grant INCa-DGOS-Inserm 6041), 2014-2017 - Inria Lille, 2015-2018 - InCA, 2016-2019 - - VidjilNet consortium at Inria, 2018-2021 + - VidjilNet consortium at Inria, 2018-2022 ## References diff --git a/doc/roadmap.md b/doc/roadmap.md index 7bc7128b9837d2c3d74f18eaaf45882f71fdaad5..7e46e905661ebe18da30c8155d0d753202189937 100644 --- a/doc/roadmap.md +++ b/doc/roadmap.md @@ -65,6 +65,8 @@ with software engineering. ## Better sequence and recombination analysis + - Detect primer dimers #2820 + - Show more sequence features (such as FR1...) in the sequence aligner #2135 + **Available since Q2 2021**, ✅ @@ -84,7 +86,7 @@ Moreover, we always try to improve and extend the analysis of some recombination - Extend set of recombinations - Find generalized recombinations, even unexpected #1400 #2818 - - Work on clone phylogenies + - Work on clonal evolution #1726, on clone phylogenies - Work on noisy data, such as third-generation sequencers These points are *ongoing research* 🚧 in the Bonsai team with selected collaborators and are not in the roadmap with fixed dates. diff --git a/doc/vidjil-algo.md b/doc/vidjil-algo.md index b506f373cd7149ffe49df279a3d3ede4190344e9..536dfd2ad73f2ebae12a8fb92edb67b759ebebce 100644 --- a/doc/vidjil-algo.md +++ b/doc/vidjil-algo.md @@ -5,7 +5,7 @@ ``` Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire -- [[http://www.vidjil.org]] - Copyright (C) 2011-2021 by Bonsai bioinformatics + Copyright (C) 2011-2022 by Bonsai bioinformatics at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille and VidjilNet consortium. contact@vidjil.org diff --git a/server/web2py/applications/vidjil/models/db.py b/server/web2py/applications/vidjil/models/db.py index da2fc5187714195fbcbf5cc817b1cb4a28239a70..cf1c599de275db078dd78a4dcd853c5a24e0497e 100644 --- a/server/web2py/applications/vidjil/models/db.py +++ b/server/web2py/applications/vidjil/models/db.py @@ -2,7 +2,7 @@ # This file is part of Vidjil , # High-throughput Analysis of V(D)J Immune Repertoire. -# Copyright (C) 2014-2017 by Bonsai bioinformatics +# Copyright (C) 2014-2022 by Bonsai bioinformatics # at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille # # "Vidjil" is free software: you can redistribute it and/or modify