vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2018-02-08T11:07:55+01:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/152Cleaning some clustering aspects2018-02-08T11:07:55+01:00Mikaël SalsonCleaning some clustering aspects* Can be launched with `-c windows`
* Score computation more correct* Can be launched with `-c windows`
* Score computation more correctMathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/151Reindent: Make the code more readable2018-02-08T11:17:32+01:00Mikaël SalsonReindent: Make the code more readableMathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/150Feature g/3035 gapped j downstream2018-03-14T11:03:48+01:00Mathieu GiraudFeature g/3035 gapped j downstreamCloses #3035.Closes #3035.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/149Feature a/fix valgrind issues2018-02-01T16:47:35+01:00Mikaël SalsonFeature a/fix valgrind issueshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/148Feature a/3008 default j downstream2019-02-27T23:03:57+01:00Mathieu GiraudFeature a/3008 default j downstream#3008#3008Algo 2018.08https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/147Add LIL-L4 demo sequences, 'make demo'2018-02-01T15:36:30+01:00Mathieu GiraudAdd LIL-L4 demo sequences, 'make demo'See #2635 and #3032.
See #2635 and #3032.
https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/146Fix valgrind issues2018-01-30T14:04:45+01:00Mikaël SalsonFix valgrind issuesThis fixes the valgrind_unit Gitlab job (that should fail now when there are memory leaks).
This also fixes some minor memory leaks.This fixes the valgrind_unit Gitlab job (that should fail now when there are memory leaks).
This also fixes some minor memory leaks.Algo 2017.11Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/145WIP: more demo2018-02-01T15:36:30+01:00Mathieu GiraudWIP: more demoSee #2635.See #2635.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/144Fix report generation with one sample2018-03-05T17:18:51+01:00Mikaël SalsonFix report generation with one sampleSolves #2942Solves #2942https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/143Feature s/misc auth2018-02-20T14:27:40+01:00Mathieu GiraudFeature s/misc authPlusieurs broutilles.
Pas encore testé/débuggé (vdj#588).Plusieurs broutilles.
Pas encore testé/débuggé (vdj#588).https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/142Feature g/1801 immuno genes2019-03-12T18:30:48+01:00Mathieu GiraudFeature g/1801 immuno genesSee #1801.See #1801.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/141Dynamic window length and position2018-11-20T09:33:12+01:00Mikaël SalsonDynamic window length and positionCloses #2913.
Closes #2913.
Algo 2017.11Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/139Feature a+c/2247 warnings2018-01-31T15:28:04+01:00Mathieu GiraudFeature a+c/2247 warningsA warning for low coverage. Other warnings will follow.
See #2247.
Closes #2917. See also #2916.
A warning for low coverage. Other warnings will follow.
See #2247.
Closes #2917. See also #2916.
Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/138Feature c/2703 numeric axes clean2017-11-29T12:32:02+01:00Mathieu GiraudFeature c/2703 numeric axes cleanApplies the same corrections to NumericAxis than what was done to FloatAxis in c566510.Applies the same corrections to NumericAxis than what was done to FloatAxis in c566510.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/137Remove default homopolymer cost2017-11-29T20:24:56+01:00Mikaël SalsonRemove default homopolymer costCloses #2851 Closes #2851 https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/136Feature c/notify server error2018-11-07T15:46:52+01:00Ghost UserFeature c/notify server errorRefactor notification code into `js/notification.js`.
Refactor notification code into `js/notification.js`.
Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/135Export align in segmenter2019-02-25T17:25:57+01:00Mikaël SalsonExport align in segmenterIt makes possible to export an alignment in the segmenter, see #2876 (no button yet).
Together with !131 (this branch has been rebased on top of it), it fixes the unit tests.It makes possible to export an alignment in the segmenter, see #2876 (no button yet).
Together with !131 (this branch has been rebased on top of it), it fixes the unit tests.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/134database.js prevent multiple consecutive calls to same URL2019-03-18T18:20:29+01:00Mathieu Girauddatabase.js prevent multiple consecutive calls to same URLprevents the application from calling a link that has been clicked
within the last second.
This is to prevent spam to the server namely if the application is
sluggish, causing users to click links multiple times because it seems
th...prevents the application from calling a link that has been clicked
within the last second.
This is to prevent spam to the server namely if the application is
sluggish, causing users to click links multiple times because it seems
that nothing is happening.
See #2893,#2894https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/133Specify which shouldvdj fail2017-11-27T18:42:21+01:00Mikaël SalsonSpecify which shouldvdj failCela aidera notamment pour savoir quels sont les nouveaux tests qui plantent (immédiatement utile pour !132 et #2851, entre autres).Cela aidera notamment pour savoir quels sont les nouveaux tests qui plantent (immédiatement utile pour !132 et #2851, entre autres).Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/132Improve V(D)J designation with long end deletions2018-03-09T20:12:26+01:00Mikaël SalsonImprove V(D)J designation with long end deletionsCloses #2767Closes #2767Algo 2017.11