vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2024-02-14T10:27:27+01:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1295gitlab-ci, add artifact for deploy review server jobs.2024-02-14T10:27:27+01:00THONIER Floriangitlab-ci, add artifact for deploy review server jobs.Need to get docker-compose as modify by the gitlab jobNeed to get docker-compose as modify by the gitlab jobhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1293docker/vidjil-client/conf: recompile cgi2023-03-23T15:49:29+01:00Mathieu Girauddocker/vidjil-client/conf: recompile cgifollowing !1284
see #4682following !1284
see #4682https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1292Resolve "Tester buildBrowserGermline.py"2023-03-02T17:12:34+01:00THONIER FlorianResolve "Tester buildBrowserGermline.py"Closes #2144Closes #2144Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1291healthcare: link to HDS official information in English2023-03-02T17:54:49+01:00Mikaël Salsonhealthcare: link to HDS official information in EnglishMikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1290documentation for 2022.12 release2023-04-03T15:51:57+02:00THONIER Floriandocumentation for 2022.12 releasedocumentation for 2022.12 releasedocumentation for 2022.12 releasehttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1288warnings: add code to show unknown warnings inside warnings view2023-03-28T16:00:42+02:00THONIER Florianwarnings: add code to show unknown warnings inside warnings viewClose #5118Close #5118Web 2022.12Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1286.gitlab-ci.yml: CI_REGISTRY* variables are predefined by Gitlab2023-01-25T19:28:02+01:00Mikaël Salson.gitlab-ci.yml: CI_REGISTRY* variables are predefined by GitlabWe should not overwrite them, therefore we rename them.We should not overwrite them, therefore we rename them.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1284core/compare-all.cpp: compute global similarities2023-03-21T16:46:03+01:00Mathieu Giraudcore/compare-all.cpp: compute global similaritiesCloses #5114Closes #5114https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1283Feature sc/hotfix prod server get reads refix2023-01-19T16:40:27+01:00Thonier FlorianFeature sc/hotfix prod server get reads refixhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1281clone; add a new axis segment ratio and his method inside clone.js2023-03-09T14:55:14+01:00Thonier Florianclone; add a new axis segment ratio and his method inside clone.jsReturn the percentage value of germline sequence covered by clonotype sequence
Exclusion of CDR3 junction deletion
ERIC recommandation have been updated and sequence should now cover the entire germline sequence.
This MR add a new axe w...Return the percentage value of germline sequence covered by clonotype sequence
Exclusion of CDR3 junction deletion
ERIC recommandation have been updated and sequence should now cover the entire germline sequence.
This MR add a new axe with the percentage of coverage for each segments.
~"NAN - Nantes"Web 2022.12Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1280Similarity, add a new way to make similarity computing on AA sequence2023-03-21T16:52:05+01:00Thonier FlorianSimilarity, add a new way to make similarity computing on AA sequence* Remove tSNE without locus split.
* Add similarity computing based on AA
* Modify code to allow clustering of clone on AA
* Add new preset similarity AA by locus
Close #5083* Remove tSNE without locus split.
* Add similarity computing based on AA
* Modify code to allow clustering of clone on AA
* Add new preset similarity AA by locus
Close #5083Web 2022.12Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1278Resolve "Bug in download of results artifact files"2023-02-01T10:38:34+01:00Thonier FlorianResolve "Bug in download of results artifact files"Closes #5108Closes #5108Web 2022.12Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1277Gitlab template mr2023-01-25T09:27:39+01:00Thonier FlorianGitlab template mrhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1276Resolve "Bug in download of results artifact files"2023-01-11T12:21:54+01:00Thonier FlorianResolve "Bug in download of results artifact files"Closes #5108Closes #5108Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1274Gitlab ci for client deployment2022-12-28T11:43:38+01:00Mikaël SalsonGitlab ci for client deploymenthttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1272Feature t/update api impersonate2023-01-12T15:21:06+01:00Thonier FlorianFeature t/update api impersonateApi_vidjil; add impersonate functionApi_vidjil; add impersonate functionMathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1271Feature t/improve logparser2023-03-09T15:03:27+01:00Thonier FlorianFeature t/improve logparserRefactor logparser tool to be more understandable by new user.Refactor logparser tool to be more understandable by new user.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1269Resolve "Run multiple pre/post fuse process in the same time"2023-03-02T17:14:28+01:00Thonier FlorianResolve "Run multiple pre/post fuse process in the same time"Closes #5105Closes #5105Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1268export.js; fix error of partial restoration after report generation2023-02-01T10:39:25+01:00Thonier Florianexport.js; fix error of partial restoration after report generationLink to #5095Link to #5095Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1265Resolve "Fuse, bad merge of sample warnings"2023-02-01T10:38:42+01:00Thonier FlorianResolve "Fuse, bad merge of sample warnings"* [ ] client part
* [x] tools part
Closes #5102* [ ] client part
* [x] tools part
Closes #5102Web 2022.12Mathieu GiraudMathieu Giraud