vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2019-09-27T11:20:29+02:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/516Resolve "Calculer les distributions sur tous les clones, pas sur le top"2019-09-27T11:20:29+02:00Thonier FlorianResolve "Calculer les distributions sur tous les clones, pas sur le top"Closes #3978Closes #3978https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/515Feature c/3902 - Foundations for distribution clones, including gray Genescan2019-10-31T19:20:23+01:00Thonier FlorianFeature c/3902 - Foundations for distribution clones, including gray GenescanCloses #1048, #3902.
Nouvelle version. Sur celle-ci, on créé tous les clones de distributions dès le départ.
Cela évite de passer par la gestion de la suppression de clones dans une vue/graphique, que nous ne savons pas faire pour l...Closes #1048, #3902.
Nouvelle version. Sur celle-ci, on créé tous les clones de distributions dès le départ.
Cela évite de passer par la gestion de la suppression de clones dans une vue/graphique, que nous ne savons pas faire pour le moment.
Ensuite on affiche les graphs en en tenant compte ou non si il sont similaires aux axes d'un scatterplot.
Pb; si grand nombre de clones, on peut faire ralentir considérablement la machine. Reste que l'on ne voudra probablement pas charger toutes les distributions inimaginable dans cette interface.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/513Quicker update2019-11-15T11:21:00+01:00Mikaël SalsonQuicker updateFix #3975 Fix #3975 Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/512Fix tag autocomplete2019-09-04T09:39:55+02:00Mikaël SalsonFix tag autocompleteFix #3973Fix #3973Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/510doc/dev-server.md: Documentation on the Scheduler2019-08-22T16:25:14+02:00Mikaël Salsondoc/dev-server.md: Documentation on the Schedulerhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/509server: update web2py to 2.20.12022-06-29T13:44:32+02:00Mathieu Giraudserver: update web2py to 2.20.1see #3751see #3751Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/508Bikeshed conf.js.sample, no tips by default2019-08-19T16:02:05+02:00Mathieu GiraudBikeshed conf.js.sample, no tips by defaulthttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/507doc/vidjil-format.md: corrections2019-08-19T15:37:21+02:00Mathieu Girauddoc/vidjil-format.md: correctionsThanks to the discussion with Patrice and @espyr.Thanks to the discussion with Patrice and @espyr.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/506Documentation on manually launching a backup2020-08-27T11:55:01+02:00Mikaël SalsonDocumentation on manually launching a backupSee vdj#903See vdj#903https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/504Feature t/3944 pouvoir calculer des distributions 22019-10-29T14:41:44+01:00Thonier FlorianFeature t/3944 pouvoir calculer des distributions 2close #3944
Doublon !503, mais la première n'avais pas le bon nom de feature.close #3944
Doublon !503, mais la première n'avais pas le bon nom de feature.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/501vidjil-format.md: Better document _average_read_length2019-07-23T16:33:22+02:00Mikaël Salsonvidjil-format.md: Better document _average_read_lengthhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/500Feature tc/improve doc2019-07-22T18:04:52+02:00Mikaël SalsonFeature tc/improve dochttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/499vidjil-format.md: minor update on seg fields2019-07-22T16:50:28+02:00Mikaël Salsonvidjil-format.md: minor update on seg fieldshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/498Resolve "Displaying all sub-clones does not work"2019-10-11T11:10:42+02:00Thonier FlorianResolve "Displaying all sub-clones does not work"Closes #3951Closes #3951https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/497Assign subset2019-09-25T13:17:27+02:00Mikaël SalsonAssign subsetSee #3917See #3917https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/496IgReC replaces spaces with underscores2019-07-12T16:23:08+02:00Mikaël SalsonIgReC replaces spaces with underscoresDoing the opposite is not really satisfactory but, on the other hand, in such a case
we know the read name should contain spaces (because of the should-vdj format).Doing the opposite is not really satisfactory but, on the other hand, in such a case
we know the read name should contain spaces (because of the should-vdj format).https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/495Update repseq_vdj for mixcr2019-07-11T20:41:19+02:00Mikaël SalsonUpdate repseq_vdj for mixcrMathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/494should-vdj-to-tap.py: --ignore_D option not working due to typo2019-09-24T17:21:58+02:00Mikaël Salsonshould-vdj-to-tap.py: --ignore_D option not working due to typoFixed and added some tests
Fix #3952Fixed and added some tests
Fix #3952https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/493Feature t/3950 igrec parser2019-07-11T20:02:44+02:00Mathieu GiraudFeature t/3950 igrec parserCloses #3950.Closes #3950.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/491doc/dev-{algo,client,server}.md: converted and split from dev.org2019-07-11T19:36:35+02:00Mathieu Girauddoc/dev-{algo,client,server}.md: converted and split from dev.orgsee #3932
pandoc --wrap=preserve --atx-headers -s -r org doc/dev.org -t gfm > doc/dev.mdsee #3932
pandoc --wrap=preserve --atx-headers -s -r org doc/dev.org -t gfm > doc/dev.md