vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2019-05-22T12:04:31+02:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/475doc/vidjil-algo.md: productivity discordance + server2019-05-22T12:04:31+02:00Mathieu Girauddoc/vidjil-algo.md: productivity discordance + serverSee #2526.See #2526.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/474Add a manual stage benchmarking vidjil-algo releases2019-09-24T18:51:58+02:00Mathieu GiraudAdd a manual stage benchmarking vidjil-algo releasesSee #2257.See #2257.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/473Release 2019.052019-05-17T16:00:15+02:00Mathieu GiraudRelease 2019.05see #3914see #3914https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/472V-QUEST API change2019-06-03T14:00:23+02:00Mikaël SalsonV-QUEST API changeFix #3913Fix #3913https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/471Resolve "Décalage de la séquence du CDR3 et de la jonction dans la fenêtre info"2019-05-23T14:41:02+02:00Thonier FlorianResolve "Décalage de la séquence du CDR3 et de la jonction dans la fenêtre info"Closes #3488Closes #3488Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/470Resolve "Avoir des germline de poulet"2019-05-23T14:05:57+02:00Thonier FlorianResolve "Avoir des germline de poulet"Closes #3910Closes #3910Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/469Resolve "Fusion de reads avec Flash"2019-10-07T16:10:55+02:00Thonier FlorianResolve "Fusion de reads avec Flash"Closes #3911Closes #3911Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/468Optimizations, including e-value computations, max122019-05-13T11:50:11+02:00Mathieu GiraudOptimizations, including e-value computations, max12Work by @mikael\-s related to #1169 (but not only).Work by @mikael\-s related to #1169 (but not only).https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/467Feature a/3206 rename and merge should2019-04-26T15:59:14+02:00Mathieu GiraudFeature a/3206 rename and merge shouldSee #3206.
Closes #3762.See #3206.
Closes #3762.Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/465Resolve "Calculer l'index de Morisita."2020-08-07T17:21:38+02:00Thonier FlorianResolve "Calculer l'index de Morisita."Closes #3830Closes #3830Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/464core/representative.h, vidjil.cpp: RandomScore by default2019-05-16T15:44:02+02:00Mathieu Giraudcore/representative.h, vidjil.cpp: RandomScore by defaultsee #3866see #3866Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/462Release 2019.04, doc, release2019-04-04T18:15:43+02:00Mathieu GiraudRelease 2019.04, doc, releasehttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/461Release 2019.042019-04-04T18:15:43+02:00Mathieu GiraudRelease 2019.04see #3891see #3891https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/459Algo: output equal score alternative genes2019-04-04T13:19:27+02:00Mikaël SalsonAlgo: output equal score alternative geneshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/458tests: this test can fail on some platforms2019-04-04T00:20:00+02:00Mathieu Giraudtests: this test can fail on some platformsSee #3414 and 68b6ebcb9f.See #3414 and 68b6ebcb9f.https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/457Better handle 'name' field for 'unexpected' sequences2019-09-24T18:48:19+02:00Mathieu GiraudBetter handle 'name' field for 'unexpected' sequencesMikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/456--config, --labels-json2019-11-15T19:06:09+01:00Mathieu Giraud--config, --labels-jsonCloses (almost independently) #3837 and #3839.
Note that #3839 does not fully use #3837: it is not possible to use a `.vidjil` output with `--labels` as a further `--config` input (but it is possible as a `--labels` input). See #3887....Closes (almost independently) #3837 and #3839.
Note that #3839 does not fully use #3837: it is not possible to use a `.vidjil` output with `--labels` as a further `--config` input (but it is possible as a `--labels` input). See #3887.
Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/455Feature at/update-should2019-04-04T00:16:52+02:00Mathieu GiraudFeature at/update-shouldMikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/454Resolve "L'alignement multiple plante quand la première séquence est retirée"2019-04-08T12:36:26+02:00Thonier FlorianResolve "L'alignement multiple plante quand la première séquence est retirée"Closes #2041Closes #2041Mathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/453Resolve "Clone en R2 perdu en R1+R2 (+R2)"2019-03-28T09:14:56+01:00Thonier FlorianResolve "Clone en R2 perdu en R1+R2 (+R2)"Closes #3833 and #3879.Closes #3833 and #3879.