vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2023-10-20T12:10:51+02:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1192Draft: Update germlines (feature-g)2023-10-20T12:10:51+02:00Mathieu GiraudDraft: Update germlines (feature-g)see #4731see #4731https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1163Draft: Shades of pink2023-03-28T16:26:22+02:00Mathieu GiraudDraft: Shades of pinksee #4795see #4795Web 2023.10https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1156Draft: Feature sc/4975 recuperer les subsets2024-01-23T10:04:18+01:00Thonier FlorianDraft: Feature sc/4975 recuperer les subsets#4975#4975https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1130Draft: create_clone_db: create for patients, runs and generic2022-03-09T11:06:40+01:00Mikaël SalsonDraft: create_clone_db: create for patients, runs and generichttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1129Draft: [Fridge] Segmentation classes2023-10-20T12:28:33+02:00Mathieu GiraudDraft: [Fridge] Segmentation classes
#2968 (and above !1112, including many other MRs :)
#2968 (and above !1112, including many other MRs :)Algo 2022.04https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1127Draft: shouldlocus in one run, skiping one test2022-02-11T10:03:05+01:00Mathieu GiraudDraft: shouldlocus in one run, skiping one testSuite de !413Suite de !413https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1122Draft: tools/vidjil-to-fasta.py: python3 [WAIT]2022-02-11T09:57:26+01:00Mathieu GiraudDraft: tools/vidjil-to-fasta.py: python3 [WAIT]https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1106Draft: Run test as gitlab-runner instead of root2021-12-17T10:26:43+01:00Mikaël SalsonDraft: Run test as gitlab-runner instead of roothttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1104Draft: Vidjil morning revival2022-03-08T18:59:37+01:00Mikaël SalsonDraft: Vidjil morning revivalhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1095Draft: Resolve "fuse.py; modifications pour les distributions"2024-02-13T09:31:07+01:00Thonier FlorianDraft: Resolve "fuse.py; modifications pour les distributions"Closes #4917Closes #4917Thonier FlorianThonier Florianhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1082Draft: Feature sc/docker launch as current user2021-11-12T14:59:04+01:00Thonier FlorianDraft: Feature sc/docker launch as current userhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1040Draft: extract non-designated sequences out of germline2021-10-16T13:01:08+02:00Mathieu GiraudDraft: extract non-designated sequences out of germline
Extrait de !1008, juste un revert de deux commits, à discuter selon #4880
Extrait de !1008, juste un revert de deux commits, à discuter selon #4880https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1032Draft: Rework Docker, clean2024-01-23T10:03:57+01:00Mathieu GiraudDraft: Rework Docker, cleanWeb 2021.11https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1030[Fridge] --ignore-kmers2024-01-23T10:03:59+01:00Mathieu Giraud[Fridge] --ignore-kmersSpecify with command-line a fasta file from which k-mers are ignored.
Au-dessus de !1126Specify with command-line a fasta file from which k-mers are ignored.
Au-dessus de !1126Algo 2022.04Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/993Draft: Spurious detections on low-complexity sequences2021-07-14T17:39:23+02:00Mathieu GiraudDraft: Spurious detections on low-complexity sequenceshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/974Draft: enable tests for segmenter.py2021-06-08T11:14:15+02:00Mathieu GiraudDraft: enable tests for segmenter.pyThis reverts commit 61e9252dadfThis reverts commit 61e9252dadfhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/958Draft: germline/homo-sapiens-wgs-filter.g: filter at once all germlines with ...2021-04-27T16:27:09+02:00Mathieu GiraudDraft: germline/homo-sapiens-wgs-filter.g: filter at once all germlines with SEG_METHOD_ONEsee #4774see #4774https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/956Draft: Improve log for post-processes2022-03-09T11:06:24+01:00Thonier FlorianDraft: Improve log for post-processesUpdate fuse to give export path
En lien avec #4686
cc @magiraud @mikael-sUpdate fuse to give export path
En lien avec #4686
cc @magiraud @mikael-shttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/952docker-compose.yml : default backup service using a restic repository2021-04-28T18:16:15+02:00Mathieu Girauddocker-compose.yml : default backup service using a restic repositoryuse djmaze/resticker restic image by mazzolino
closes #4625use djmaze/resticker restic image by mazzolino
closes #4625https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/949Draft: [DO NOT MERGE] A cool font through 'addons'2021-04-16T07:47:51+02:00Mathieu GiraudDraft: [DO NOT MERGE] A cool font through 'addons'Proposal for #2784Proposal for #2784