vidjil merge requestshttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests2021-11-22T14:31:17+01:00https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/810Resolve "Config import AIRR pour le web"2021-11-22T14:31:17+01:00Thonier FlorianResolve "Config import AIRR pour le web"Closes #4481Closes #4481Web 2021.11Mikaël SalsonMikaël Salsonhttps://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/188Add IgReC support2018-05-28T09:34:38+02:00Alexander ShlemovAdd IgReC supportAt last I've finished with IgReC-to-vidjil-platform integration.
The latest patched IgReC (https://github.com/ablab/y-tools/tree/testing) should be installed on worker (I suggest /usr/local/bin). The best way to do it is run `make tgz...At last I've finished with IgReC-to-vidjil-platform integration.
The latest patched IgReC (https://github.com/ablab/y-tools/tree/testing) should be installed on worker (I suggest /usr/local/bin). The best way to do it is run `make tgz` in igrec repo root and unpack the content of <repo root>/packages/igrec-X.X.X-Linux.tar.gz into worker filesystem. Also IgReC requires several python packages:
```
apt-get install -y python-matplotlib python-biopython python-numpy python-scipy python-pandas python-pip
python -m pip install seaborn
```
I have already automated IgReC (and even MiXCR) deployment using docker-compose. I will add my Dockerfiles in a separate pull-request.Alexander ShlemovAlexander Shlemov