Issues · vidjil / vidjil

New issue

Sablier / indicateur s'active lors de l'upload

#1961 · opened Nov 29, 2016 by Vidjil Team !!-bug client-ergonomy priority-2
- CLOSED
- 1
updated Nov 22, 2017
La barre légère du "compare two samples" ne se voit plus dans le graphe

#2874 · opened Nov 22, 2017 by Mathieu Giraud !!-bug client-graph client-grid user-request
- CLOSED
- 2
updated May 31, 2018
Exporter l'alignement

#2876 · opened Nov 22, 2017 by Mathieu Giraud *-go LIL-Lille Paris-Pitié client-aligner client-export cpp-dynprog
- CLOSED
- 1
- 10
updated Feb 28, 2019
Tests fonctionnels sur un serveur

#2881 · opened Nov 23, 2017 by Mathieu Giraud !-important #-quality dev-ci dev-tests dev-tests-watir server-docker server-fuse server-upload
- CLOSED
- 12
updated Aug 30, 2018
Get support avec Outlook : mauvais placement du sujet

#2882 · opened Nov 23, 2017 by Tatiana Rocher
- CLOSED
- 1
- 0
updated Feb 16, 2018
Bypass your cache

#2889 · opened Nov 23, 2017 by Mathieu Giraud com com-mail-template doc wont-fix
- CLOSED
- 9
updated Feb 11, 2020
Doit-on cacher ou inactiver les boutons cliqués dans l'interface ?

#2894 · opened Nov 24, 2017 by Ryan Herbert client-ergonomy server
- CLOSED
- 12
updated Sep 24, 2018
Autocomplétion patient/run/set

#2895 · opened Nov 24, 2017 by Mathieu Giraud client client-autocomplete
- CLOSED
- 1
updated Jan 30, 2018
Upload d'un sample : choix de n sample sets

#2896 · opened Nov 24, 2017 by Mathieu Giraud client client-autocomplete client-ergonomy server-sample-sets
- CLOSED
- 1
- 0
updated Mar 21, 2018
Tests unitaires clients : tous les tests ne sont pas lancés via Nightmare

#2899 · opened Nov 24, 2017 by Mikaël Salson !!-bug dev-ci dev-tests
- CLOSED
- 1
- 8
updated Nov 28, 2017
Gitlab CI algo sur plusieurs slaves

#2900 · opened Sep 06, 2017 by Mathieu Giraud Algo 2019.05 !-important *-go cpp dev-ci
- CLOSED
- 11
updated May 20, 2020
Les histogrammes sur des valeurs numériques devraient avoir des légendes régulières

#2905 · opened Nov 28, 2017 by Mathieu Giraud !!-bug !-important *-go client client-axis
- CLOSED
- 1
- 8
updated Aug 14, 2018
Clone manqué avec une grosse délétion (read trop court pour la fenêtre)

#2910 · opened Nov 29, 2017 by Anne de Septenville Algo 2017.11 !-important +-deploy Paris-Pitié bio-analyze-more cpp cpp-heuristic
- CLOSED
- 8
updated Apr 10, 2018
La config pourrait s'afficher dans le graph dans compare samples

#2911 · opened Nov 29, 2017 by Mathieu Giraud client-graph
- CLOSED
- 1
updated Nov 29, 2017
Diminuer ou décaler dynamiquement, par seuil, la taille de la fenêtre

#2913 · opened Nov 29, 2017 by Mikaël Salson Algo 2017.11 !-important !-reflexion bio-analyze-more cpp cpp-heuristic
- CLOSED
- 1
- 2
updated Apr 15, 2020
Sortir des champs `warn` dans le C++

#2916 · opened Nov 29, 2017 by Mathieu Giraud Algo 2017.11 *-go bio-control cpp cpp-export
- CLOSED
- 4
updated Jan 27, 2018
Afficher dans le client les `warn`provenant du .vidjil

#2917 · opened Nov 29, 2017 by Mathieu Giraud *-go bio-control client
- CLOSED
- 1
- 0
updated Feb 16, 2018
TEST_TAP_EQUAL pour les tests unitaires

#2919 · opened Nov 30, 2017 by Mathieu Giraud *-go cpp dev-tests priority-1-low
- CLOSED
- 0
updated Jan 17, 2018
Documenter germline/homo-sapiens.g et les méthodes de recombinaison

#2920 · opened Nov 30, 2017 by Mathieu Giraud com-paper cpp cpp-heuristic doc repseq-formats
- CLOSED
- 1
updated Sep 22, 2020
JS : `==` ou `===` en comparant par rapport à `undefined` ou `0`

#2921 · opened Nov 30, 2017 by Mikaël Salson dev-policy
- CLOSED
- 2
updated Apr 10, 2018
Avoir l'abondance des clones dans les résultats de la CloneDB

#2929 · opened Dec 04, 2017 by Mikaël Salson *-go LIL-Lille app-clonedb feature
- CLOSED
- 1
- 2
updated Jul 26, 2018
Voir les tags des sets résultats de CloneDB

#2933 · opened Dec 04, 2017 by Mathieu Giraud app-clonedb client-tags
- CLOSED
- 1
- 1
updated Sep 26, 2018
Taille de fenêtre en IGH : cas où 50 ne suffit pas ?

#1266 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion bio-germlines cpp-heuristic priority-2
- CLOSED
- 1
updated Nov 20, 2018
Raisons de non-segmentation : remettre à plat, documenter ?

#1273 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug !-reflexion cpp-heuristic priority-1-low
- CLOSED
- 0
updated Nov 21, 2019
Le calcul de la e-valeur devrait prendre en compte le -t

#1604 · opened Nov 29, 2016 by Vidjil Team bio-e-value cpp-heuristic priority-1-low wont-fix
- CLOSED
- 1
updated Apr 10, 2018
Recombinaisons TRDD/TRAJ

#1586 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-germlines cpp-heuristic priority-5-today
- CLOSED
- 0
updated Dec 04, 2017
Translocations, régions aval/amont

#1492 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines-pseudo priority-2
- CLOSED
- 1
updated Apr 10, 2018
germlines.data et offline

#1237 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines client client-offline priority-5-today
- CLOSED
- 0
updated Dec 04, 2017
Jenkins : relancer Vidjil-data si changement dans le git dans germline/

#1234 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines dev-ci wont-fix
- CLOSED
- 1
updated Aug 27, 2020
Branche improve_representative

#1998 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Dec 04, 2017
C++11 ?

#1344 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion cpp priority-4-week
- CLOSED
- 0
updated Dec 04, 2017
FineSegmenter : refuser de segmenter si cela n'est pas joli

#1230 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-dynprog cpp-finesegmenter priority-4-week
- CLOSED
- 0
updated Dec 04, 2017
Utiliser pour de vrai les séquences upstream/downstream

#1549 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go REN-Rennes bio-analyze-more bio-germlines cpp-heuristic priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
stats : segmenté ou avec window ?

#1517 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control cpp priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
germlines.data: l'utiliser dans le browser

#1235 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-germlines client priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
Changer le germline d'un clone

#1553 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-ergonomy priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
germlines.js: mise à jour des séquences

#1236 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion bio-germlines priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
germline/germlines.data: trouver un format utile, l'utiliser un peu partout

#1012 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard bio-germlines cpp priority-1-low repseq-standardization
- CLOSED
- 0
updated Dec 04, 2017
Segmenter: pouvoir mettre les V et J germline dedans...

#1925 · opened Nov 29, 2016 by Vidjil Team Web 2017.09 bio-CLL client client-aligner feature priority-3-month
- CLOSED
- 8
updated Feb 13, 2019
TRB incomplet

#1634 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-analyze-more bio-germlines priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
Germline 'xxx': on aimerait aussi avoir le FineSegmenter

#1605 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines bio-germlines-pseudo cpp cpp-finesegmenter priority-3-month
- CLOSED
- 0
updated Dec 04, 2017
Permettre de ne lancer que certains germlines d'un fichier .germlines

#2134 · opened Jan 26, 2017 by Mikaël Salson Algo 2017.03 +-working bio-germlines cpp cpp-options feature
- CLOSED
- 4
updated Dec 04, 2017
Germlines de souris et de rat

#2133 · opened Jan 26, 2017 by Mathieu Giraud Algo 2017.03 bio-germlines bio-species
- CLOSED
- 7
updated Dec 04, 2017
Mettre à jour les germlines depuis IMGT

#1766 · opened Nov 29, 2016 by Vidjil Team Algo 2017.03 Jan 16, 2017 bio-germlines bio-species dev-tests priority-2 repseq-IMGT
- CLOSED
- 1
updated Mar 14, 2018
Classes des Ig en RNA-Seq

#1687 · opened Nov 29, 2016 by Vidjil Team old_tracker LYON-Sarah bio-analyze-more bio-immuno cpp cpp-heuristic feature priority-2
- CLOSED
- 0
updated Dec 04, 2017
Valeur de -m par défaut pas très claire

#1673 · opened Nov 29, 2016 by Vidjil Team Algo 2017.07 bio-germlines cpp cpp-heuristic cpp-options priority-2
- CLOSED
- 2
updated Dec 04, 2017
vidjil.cpp: CMD_GERMLINES: permettre de spécifier les germlines depuis la ligne de commande (et de tous les prendre si besoin)

#1006 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines cpp priority-2
- CLOSED
- 0
updated Dec 04, 2017
Automatiser création pseudo-germlines, en particulier Dd2-Dd3, get-germline incomplet

#973 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines priority-1-low
- CLOSED
- 0
updated Dec 04, 2017
Savoir sur quel sha1 ont été construits les paquets Debian et le dock

#2939 · opened Dec 06, 2017 by Mathieu Giraud dev-cd dev-ci dev-gitlab dev-packaging server-docker
- CLOSED
- 1
- 4
updated Nov 26, 2019
Construire un paquet Docker sur une feature-.*s.*

#2940 · opened Dec 07, 2017 by Mathieu Giraud !-important *-go dev-ci dev-gitlab server-docker
- CLOSED
- 2
updated Nov 20, 2018
Bug lors de la génération de rapport

#2942 · opened Dec 08, 2017 by Mikaël Salson !!-bug !-important *-go LIL-Lille PAR-Debré Paris - St Louis client-export client-rapport priority-4-week
- CLOSED
- 12
updated Mar 05, 2018
Conserver le chemin précédent lors du chargement d'un fichier 'network'

#2948 · opened Dec 11, 2017 by Ryan Herbert *-go LIL-Lille client client-ergonomy server-mounted-files user-request
- CLOSED
- 1
- 4
updated Mar 21, 2018
Tester l'installation via Docker sur une machine personnelle

#2950 · opened Dec 13, 2017 by Mathieu Giraud doc server-docker
- CLOSED
- 2
updated Oct 16, 2018
Mettre à jour la documentation Docker

#2954 · opened Dec 13, 2017 by Mathieu Giraud doc server-docker
- CLOSED
- 1
updated Oct 16, 2018
Mettre dans le mail "request analysis" quelque chose pour qu'on retrouve de qui il s'agit

#2960 · opened Dec 19, 2017 by Mathieu Giraud *-go
- CLOSED
- 1
- 0
updated Feb 16, 2018
Choix du dernier set/run lors de l'import d'un nouvel échantillon

#2961 · opened Dec 20, 2017 by Anne de Septenville Paris-Pitié client-autocomplete feature server server-sample-sets
- CLOSED
- 5
updated Dec 20, 2017
Auto-complétion au clic avec les derniers set modifiés

#2963 · opened Dec 20, 2017 by Mikaël Salson Paris-Pitié client-autocomplete feature server server-sample-sets user-request
- CLOSED
- 1
- 2
updated Mar 21, 2018
Séquence non analysée avec la présence du gène constant

#2964 · opened Dec 20, 2017 by Anne de Septenville Algo -- Important !!-bug !-reflexion bio-analyze-more bio-rnaseq cpp cpp-heuristic
- CLOSED
- 12
updated Feb 13, 2020
Autocomplétion patient/run/set : pointer sur :hover de la croix

#2976 · opened Jan 16, 2018 by Mathieu Giraud client-autocomplete client-ergonomy
- CLOSED
- 1
- 0
updated Mar 21, 2018
Autocomplétion patient/run/set : mettre une classe CSS différente dans le menu

#2977 · opened Jan 16, 2018 by Mathieu Giraud client-autocomplete
- CLOSED
- 1
- 0
updated Mar 21, 2018
Rendre visible le numéro de sample set aux utilisateurs 2 of 2 tasks completed

#2978 · opened Jan 16, 2018 by Mathieu Giraud com-mail-template support-policy
- CLOSED
- 1
- 1
updated Mar 21, 2018
Autocomplétion patient/run/set : texte à afficher dans le span

#2979 · opened Jan 16, 2018 by Mathieu Giraud bikeshedding client-autocomplete
- CLOSED
- 1
- 0
updated Mar 21, 2018
Autocomplétion patient/run/set : utiliser la classe CSS du menu

#2981 · opened Jan 16, 2018 by Mathieu Giraud bikeshedding client-autocomplete
- CLOSED
- 1
updated Jan 30, 2018
Shorter / shifted w: documenter (algo.org, user.org)

#2982 · opened Jan 16, 2018 by Mathieu Giraud Algo 2017.11 doc
- CLOSED
- 2
updated Jan 31, 2018
Shorter / shifted w: Refaire passer les tests

#2983 · opened Jan 16, 2018 by Mathieu Giraud Algo 2017.11 dev-tests
- CLOSED
- 2
updated Jan 16, 2018
Le paramètre patient fonctionne-t-il toujours dans l'URL ?

#2988 · opened Jan 17, 2018 by Mikaël Salson !!-bug #-quality client-api server-sample-sets
- CLOSED
- 1
updated Feb 23, 2018
Réécrire les tests unitaires avec TEST_TAP_EQUAL

#2989 · opened Jan 17, 2018 by Mathieu Giraud Algo 2017.11 *-go cpp dev-tests priority-1-low
- CLOSED
- 1
updated Jan 30, 2018
'align' doit être robuste en cas de réponse mal formée du serveur

#2991 · opened Jan 18, 2018 by Mathieu Giraud *-go client client-aligner dev-robust server-cgi
- CLOSED
- 3
updated Mar 06, 2018
'align' doit être robuste en cas de non-réponse du serveur

#2992 · opened Jan 18, 2018 by Mathieu Giraud *-go client client-aligner dev-robust server-cgi
- CLOSED
- 3
updated Jan 18, 2018
Pas d'avertissement lorsque la date rentrée pour un sample est incorrecte

#2997 · opened Jan 18, 2018 by Mikaël Salson Web 2018.01 !!-bug LIL-Lille client-ergonomy server server-sample-sets
- CLOSED
- 1
- 2
updated Mar 21, 2018
Le spinner tourne parfois alors qu'il ne se passe rien

#2998 · opened Jan 18, 2018 by Mikaël Salson Web 2018.03 !!-bug client client-ergonomy
- CLOSED
- 2
updated Feb 15, 2019
Release 2018.01 -> 2018.02

#2999 · opened Jan 18, 2018 by Mathieu Giraud Algo 2017.11 +-working dev-build
- CLOSED
- 14
updated Apr 05, 2018
Releases algo via Gitlab CI

#3002 · opened Jan 21, 2018 by Mathieu Giraud Algo 2018.08 dev-build dev-ci dev-gitlab
- CLOSED
- 1
- 0
updated Feb 12, 2019
Makefile et Makefile.algo, séquence de make

#3003 · opened Jan 21, 2018 by Mathieu Giraud Algo 2017.11 dev-build doc
- CLOSED
- 6
updated Feb 01, 2018
Passer la doc en markdown 1 of 2 tasks completed

#3004 · opened Jan 21, 2018 by Mathieu Giraud Algo 2018.08 doc
- CLOSED
- 1
- 6
updated Sep 07, 2018
Génération doc html

#3005 · opened Jan 21, 2018 by Mathieu Giraud Algo 2018.08 doc
- CLOSED
- 5
updated Jul 10, 2018
Création batch de sets: afficher un retour "run créé"

#3006 · opened Jan 23, 2018 by Mathieu Giraud
- CLOSED
- 1
- 0
updated Mar 21, 2018
Mettre les séquences downstream des J dans les germlines ?

#3008 · opened Jan 24, 2018 by Mikaël Salson Algo 2018.08 !!-bug PAR-Debré app-analyze bio-AA bio-germlines client-aligner cpp
- CLOSED
- 8
updated Jul 24, 2018
Les séquences upstream ou downstream sont parfois trop courtes : récupérer les positions dans le génome, coller up/down

#3009 · opened Jan 24, 2018 by Mikaël Salson Algo 2018.08 !!-bug !-important *-go PAR-Debré bio-germlines cpp
- CLOSED
- 1
- 19
updated Sep 01, 2018
Vérifier que les codes/champs `warn` du C++ sont compatibles avec la liste souhaitée dans le futur

#3010 · opened Jan 27, 2018 by Mathieu Giraud Algo 2017.11 bikeshedding bio-control
- CLOSED
- 0
updated Jun 22, 2018
Short / shifted window : re-rendre cohérent le message sur stdout

#3011 · opened Jan 27, 2018 by Mathieu Giraud Algo 2017.11 bikeshedding cpp doc
- CLOSED
- 4
updated Jan 29, 2018
Fichiers qui trainent dans la release

#3012 · opened Jan 30, 2018 by Mathieu Giraud Algo 2017.11
- CLOSED
- 4
updated Jan 31, 2018
Warnings compilation sur Jenkins et ailleurs

#3013 · opened Jan 30, 2018 by Mathieu Giraud Algo 2017.11 cpp-compiler
- CLOSED
- 7
updated Jan 30, 2018
Faire passer all-slaves sur Jenkins

#3014 · opened Jan 30, 2018 by Mathieu Giraud Algo 2017.11
- CLOSED
- 10
updated Jan 31, 2018
Support de gcc 7.3 ?

#3015 · opened Jan 30, 2018 by Mathieu Giraud Algo 2018.08 cpp-compiler doc
- CLOSED
- 3
updated Jun 21, 2018
Autocomplétion patient/run/set : trier par id décroissant

#3016 · opened Jan 30, 2018 by Mikaël Salson *-go client-autocomplete server-sample-sets
- CLOSED
- 1
- 0
updated Mar 21, 2018
Multi création de sets : pouvoir retirer un set

#3017 · opened Jan 30, 2018 by Mikaël Salson client-ergonomy server-sample-sets
- CLOSED
- 1
- 0
updated Mar 21, 2018
La sortie XML de Valgrind doit être dans un fichier différent pour chaque should_get

#3018 · opened Jan 31, 2018 by Mikaël Salson Algo 2017.11 cpp dev-ci
- CLOSED
- 3
updated Jan 31, 2018
Segmentation fault sous CentOS6.3 avec g++4.8

#3023 · opened Jan 31, 2018 by Mikaël Salson Algo 2017.11 !!-bug cpp
- CLOSED
- 2
updated Jan 31, 2018
Compléter .gitlab-ci.yml pour zlib et valgrind ?

#3025 · opened Jan 31, 2018 by Mathieu Giraud Algo 2018.08 dev-build dev-ci wont-fix
- CLOSED
- 1
updated Jun 15, 2018
Client : afficher les warnings, se servir éventuellement du code

#3029 · opened Jan 31, 2018 by Mathieu Giraud bio-control client doc
- CLOSED
- 5
updated Feb 20, 2018
Refaire passer les tests valgrind fonctionnels

#3031 · opened Jan 31, 2018 by Mathieu Giraud dev-tests-should-get
- CLOSED
- 6
updated Feb 02, 2018
Faire passer vidjil-h-examples.should-get

#3032 · opened Jan 31, 2018 by Mikaël Salson Algo 2017.11 cpp dev-ci dev-tests
- CLOSED
- 4
updated Feb 01, 2018
Liste des tests should-get qui ne passent pas lors d'un make -k should

#3033 · opened Feb 01, 2018 by Mathieu Giraud *-go dev-tests dev-tests-should-get
- CLOSED
- 1
updated Apr 04, 2018
split-from-imgt.py : germlines J gappées

#3035 · opened Feb 05, 2018 by Mathieu Giraud +-working bio-germlines
- CLOSED
- 1
- 0
updated Apr 06, 2018
Germlines et tests

#3036 · opened Feb 06, 2018 by Mathieu Giraud bio-germlines dev-policy dev-tests
- CLOSED
- 1
- 6
updated Mar 20, 2018
Compléter la documentation sur Docker

#3037 · opened Feb 06, 2018 by Mikaël Salson doc server server-docker
- CLOSED
- 1
updated Oct 16, 2018
Où mettre les scripts permettant de lancer/analyser les should-get.tests ?

#3039 · opened Feb 08, 2018 by Mathieu Giraud dev-build dev-tests
- CLOSED
- 1
- 1
updated Mar 20, 2018
CLI11: upgrade to 1.3

#3040 · opened Feb 08, 2018 by Mathieu Giraud cpp-options
- CLOSED
- 2
updated Nov 20, 2018
Stats sur un ensemble de samples : contrôleur

#3041 · opened Feb 09, 2018 by Mathieu Giraud *-go feature priority-4-week server server-qc-stats
- CLOSED
- 15
updated Sep 14, 2018