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  • vidjil
  • vidjilvidjil
  • Issues

  • Open 1,722
  • Closed 2,230
  • All 3,952
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title
  • Run / SampleSet / Tags ?
    #1745 · created Nov 29, 2016 by Vidjil Team   old_tracker !-reflexion bio-metadata feature priority-3-month server-database server-sample-sets
    • CLOSED
    • 1
    updated Feb 08, 2017
  • Charger / Sauver les .analysis dans des vues autres que Patient
    #1746 · created Nov 29, 2016 by Vidjil Team   old_tracker !-hard !-reflexion BRU-Bruxelles priority-3-month
    • 0
    updated Nov 29, 2016
  • Export fasta : mettre la taille en bp
    #1747 · created Nov 29, 2016 by Vidjil Team   old_tracker *-go client client-export priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Export des smaller clones
    #1748 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go client-export priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Clustering par similarité
    #1749 · created Nov 29, 2016 by Vidjil Team   old_tracker client
    • 0
    updated Nov 30, 2016
  • Collaboration Montréal
    #1750 · created Nov 29, 2016 by Vidjil Team   old_tracker bio-species priority-2
    • 0
    updated Jan 24, 2017
  • Les boules sont trop petites
    #1751 · created Nov 29, 2016 by Vidjil Team   old_tracker
    • CLOSED
    • 0
    updated Feb 02, 2017
  • Expliciter le N dans le nom de la séquence, noms courts/longs
    #1752 · created Nov 29, 2016 by Vidjil Team   old_tracker !-reflexion PAN-Necker client-ergonomy client-export client-less-css feature priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Select All / Exporter tous les clones
    #1754 · created Nov 29, 2016 by Vidjil Team   old_tracker client-ergonomy client-export feature priority-2
    • 0
    updated Jan 18, 2019
  • EOF while reading FASTA/FASTQ file : être robuste
    #1755 · created Nov 29, 2016 by Vidjil Team   old_tracker cpp dev-robust priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • should-to-tap.sh veut un sed GNU ?
    #1757 · created Nov 29, 2016 by Vidjil Team   dev-build dev-tests dev-tests-should-get doc priority-2
    • CLOSED
    • 2
    updated Apr 12, 2018
  • Vérifier 783d0b1, plus de reads en AMBIGUOUS
    #1758 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • cluster fait disparaître les smaller clones
    #1759 · created Nov 29, 2016 by Vidjil Team   !!-bug client client-cluster priority-1-low
    • 1
    updated Jan 18, 2019
  • Une séquence ambiguë à tort ? -4
    #1760 · created Nov 29, 2016 by Vidjil Team   old_tracker bio-germlines-pseudo cpp-heuristic priority-1-low
    • 0
    updated Feb 04, 2017
  • controller/ view run
    #1761 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 server
    • CLOSED
    • 1
    updated Apr 17, 2018
  • retrieve and display in a drop-list all .analysis who share at least one sample with the currently diplayed sample_set
    #1762 · created Nov 29, 2016 by Vidjil Team   old_tracker client priority-3-month server
    • 0
    updated Nov 29, 2016
  • Factoriser les doublons entre list.js et segmenter.js
    #1763 · created Nov 29, 2016 by Vidjil Team   Web 2017.05   client client-aligner client-cloneList dev-policy dev-refactor priority-3-month
    • CLOSED
    • 15
    updated May 23, 2017
  • Nomenclature originale, PMC2706371
    #1764 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 repseq-standardization
    • 0
    updated Nov 29, 2016
  • clone.js, .getShortName() : setting pour afficher ou non les séquences
    #1765 · created Nov 29, 2016 by Vidjil Team   client client-cloneList client-ergonomy priority-2
    • CLOSED
    • 12
    updated Nov 15, 2017
  • Notifications : mettre un lien vers le format de markdown (?) supporté sur la page d'édition
    #1767 · created Nov 29, 2016 by Vidjil Team   old_tracker client-notifications doc priority-2 server
    • CLOSED
    • 0
    updated Nov 09, 2017
  • clones : null si pas de clones
    #1773 · created Nov 29, 2016 by Vidjil Team   !!-bug cpp priority-2 repseq-formats server-fuse
    • 1
    • 5
    updated Feb 03, 2020
  • BJH, .doc
    #1774 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Génération de données simulées
    #1776 · created Nov 29, 2016 by Vidjil Team   old_tracker com-paper priority-1-low
    • CLOSED (MOVED)
    • 0
    updated Apr 16, 2018
  • Release 2016-02
    #1777 · created Nov 29, 2016 by Vidjil Team   old_tracker #-sensible priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Diagramme de Venn et log-log
    #1778 · created Nov 29, 2016 by Vidjil Team   old_tracker client client-log-log feature priority-2
    • 0
    updated Nov 19, 2021
  • xxx problème dans le nommage de certains clones
    #1779 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go bio-germlines-pseudo client cpp-dynprog cpp-heuristic priority-4-week
    • CLOSED
    • 0
    updated Feb 04, 2017
  • Indice/index de clonalité, diversité : par locus ?
    #1781 · created Nov 29, 2016 by Vidjil Team   Algo 2022.01   *-go PAN-Necker bio-control bio-diversity com-vw-vidjil-workshop cpp next-audio user-request
    • CLOSED
    • 2
    • 2
    updated Feb 17, 2022
  • Indice/index de clonalité, diversité, options et clustérisation
    #1782 · created Nov 29, 2016 by Vidjil Team   old_tracker bio-control bio-diversity cpp cpp-cluster priority-2
    • 0
    updated Nov 29, 2016
  • Indice/index de clonalité ou autres valeurs sur le time graph
    #1783 · created Nov 29, 2016 by Vidjil Team   !-reflexion bio-diversity client feature
    • 1
    updated Mar 21, 2019
  • Export ou import VDJtools
    #1785 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 repseq-formats
    • 0
    updated Nov 29, 2016
  • Documentation
    #1786 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Documentation : format de la doc, technique
    #1787 · created Nov 29, 2016 by Vidjil Team   old_tracker doc priority-2
    • CLOSED
    • 2
    updated Sep 07, 2018
  • Server error sur URL mal formée
    #1789 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug priority-2 server
    • CLOSED
    • 0
    updated Nov 04, 2021
  • Séparation serveur / calcul
    #1790 · created Nov 29, 2016 by Vidjil Team   old_tracker
    • CLOSED
    • 0
    updated Feb 02, 2017
  • VDDJ et sortie json
    #1792 · created Nov 29, 2016 by Vidjil Team   old_tracker PAN-Necker cpp-finesegmenter priority-2 repseq-formats
    • 0
    updated Nov 29, 2016
  • VDDJ et overlap
    #1793 · created Nov 29, 2016 by Vidjil Team   old_tracker PAN-Necker cpp-finesegmenter priority-2
    • 0
    updated Nov 29, 2016
  • make unit_browser est cassé : germline.js / germline.data
    #1796 · created Nov 29, 2016 by Vidjil Team   old_tracker bio-germlines dev-tests priority-4-week
    • CLOSED
    • 0
    updated Apr 08, 2021
  • Avoir une interface pour le FineSegmenter d'un petit nombre de clones
    #1797 · created Nov 29, 2016 by Vidjil Team   old_tracker app-analyze client client-aligner cpp-finesegmenter feature priority-4-week
    • CLOSED
    • 1
    updated Feb 02, 2017
  • should-vdj-to-tap.py: meilleur diff, détailler l'échec
    #1800 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-tests feature priority-2
    • 0
    updated Nov 29, 2016
  • CD et autres choses utiles pour l'immuno en RNA-Seq
    #1801 · created Nov 29, 2016 by Vidjil Team   LYON-Sarah bio-analyze-more bio-control bio-germlines bio-germlines-pseudo bio-immuno bio-rnaseq cpp cpp-heuristic feature priority-2
    • 8
    updated Nov 19, 2021
  • Release: bioinfo.lifl.fr, www.vidjil.org/releases/
    #1802 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2
    • CLOSED
    • 1
    updated Nov 20, 2018
  • Accepter plusieurs -g dans la ligne de commande
    #1803 · created Nov 29, 2016 by Vidjil Team   old_tracker cpp priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Serveur lille, configuration
    #1804 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-3-month
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Tester align / cgi en test fonctionnel/intégration
    #1805 · created Nov 29, 2016 by Vidjil Team   dev-tests priority-2
    • 4
    updated Jan 08, 2021
  • should-vdj / Demo : TRA
    #1807 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-tests priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • should-vdj / Demo : TRB
    #1808 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-tests priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Ne pas afficher "smaller clones" quand il n'y en a pas
    #1809 · created Nov 29, 2016 by Vidjil Team   old_tracker client priority-2
    • 0
    updated Nov 29, 2016
  • Des séquences sont en reverse dans le .vidjil
    #1812 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go client-export cpp priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Mieux tester les champs critiques de la sortie .vidjil
    #1813 · created Nov 29, 2016 by Vidjil Team   old_tracker cpp dev-tests priority-2 repseq-formats
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Mise à jour germlines IMGT et contrôle
    #1815 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-robust priority-2 repseq-IMGT
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Indicateur de progression / tâches en cours pour ce qui est lancé par task.py
    #1817 · created Nov 29, 2016 by Vidjil Team   cpp-speed server server-ergonomy server-task.py
    • 0
    updated Feb 28, 2019
  • Priorités pour les tâches
    #1818 · created Nov 29, 2016 by Vidjil Team   priority-2 server server-speed server-task.py
    • 3
    updated Mar 09, 2022
  • Mieux comprendre IMGT/JunctionAnalysis
    #1819 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 repseq-IMGT
    • 0
    updated Jun 05, 2019
  • annotations : Quand il n'y a qu'un point, on ne voit pas les infos du sample
    #1820 · created Nov 29, 2016 by Vidjil Team   old_tracker client priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • annotations: cela bouge toujours un peu quand on édite les infos du patient
    #1821 · created Nov 29, 2016 by Vidjil Team   old_tracker client priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • ./should-to-tap.sh stanford-fuse.should_get lève une OSError, mais le test passe
    #1822 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-tests priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • CDR3: affichage dans le browser
    #1823 · created Nov 29, 2016 by Vidjil Team   old_tracker client priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Séquences productives : frameshifts menant à des séquences non productives
    #1824 · created Nov 29, 2016 by Vidjil Team   bio-AA bio-CLL bio-productivity cpp
    • CLOSED
    • 9
    updated Feb 17, 2021
  • annotations: affichage par défaut, en gris
    #1825 · created Nov 29, 2016 by Vidjil Team   old_tracker client com-first-time-user priority-3-month
    • CLOSED
    • 0
    updated Dec 27, 2016
  • notable/1541 : FineSegmenter
    #1828 · created Nov 29, 2016 by Vidjil Team   !!-bug bio-analyze-more bio-large-deletion dev-tests-notable priority-2
    • CLOSED
    • 1
    updated Jun 24, 2018
  • Avoir un exécutable sur un système propriétaire
    #1829 · created Nov 29, 2016 by Vidjil Team   old_tracker LIM-Limoges wont-fix
    • CLOSED
    • 0
    updated Feb 02, 2017
  • Vidjil morning : /etc/update-motd.d/50-landscape-sysinfo
    #1830 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-1-low server-monitor
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Vidjil morning : le mettre dans les scripts d'install
    #1831 · created Nov 29, 2016 by Vidjil Team   priority-1-low server-monitor
    • CLOSED
    • 1
    updated Oct 27, 2017
  • Meilleur monitoring
    #1832 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-1-low server-monitor
    • CLOSED
    • 1
    updated Feb 09, 2021
  • VidjilInfoWriter, close: informations sur le lancement de MiXCR
    #1833 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week repseq-mixcr repseq-platform
    • CLOSED
    • 0
    updated Nov 29, 2016
  • VidjilInfoWriter, close ? "log" de MiXCR
    #1834 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • VidjilInfoWriter, putReads : gestion des locus
    #1835 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • MiXCR : rebaser avant un pull request
    #1837 · created Nov 29, 2016 by Vidjil Team   doc repseq-mixcr repseq-platform
    • 0
    updated Aug 19, 2019
  • MiXCR : compilation, tests
    #1838 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 repseq-mixcr repseq-platform
    • 0
    updated Nov 29, 2016
  • VidjilInfoWriter: "total" doit être le nombre de reads d'entrée
    #1839 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Réuploader un fichier existant ne fonctionne pas
    #1840 · created Nov 29, 2016 by Vidjil Team   !!-bug priority-2 server server-upload
    • CLOSED
    • 5
    updated Jan 11, 2017
  • VidjilFieldExtractor, extract : autres infos, FR1234/CDR123
    #1841 · created Nov 29, 2016 by Vidjil Team   client-aligner priority-2 repseq-formats repseq-mixcr repseq-platform
    • 1
    updated May 28, 2020
  • imseq
    #1842 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2 repseq-platform
    • 0
    updated Nov 29, 2016
  • /README.org : mettre à jour
    #1843 · created Nov 29, 2016 by Vidjil Team   old_tracker com priority-2
    • CLOSED
    • 1
    updated Nov 20, 2018
  • should-vdj : syntaxe pour les alternatives / ambiguïtés
    #1844 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-tests dev-tests-curated-vdj priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Mieux packager les releases algo, /README.md
    #1845 · created Nov 29, 2016 by Vidjil Team   com-first-time-user cpp priority-1-low
    • 1
    updated Aug 27, 2020
  • Icones, jenkins et autres
    #1848 · created Nov 29, 2016 by Vidjil Team   old_tracker dev-build priority-2
    • CLOSED
    • 1
    updated Aug 27, 2020
  • sample_set_run : API URL cassée
    #1849 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • "upload list" : mettre "uploading icon-spin4" tant qu'il y a des uploads en cours
    #1850 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2
    • 0
    updated Nov 29, 2016
  • VDJ-IMGT : trouver le nom
    #1854 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Segmenter : souligné CD3-IMGT disparaît au survol
    #1855 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client-aligner priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • CDR3 / JUNCTION dans .getHtmlInfo (clone.js)
    #1856 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • CDR3 / JUNCTION color by productive
    #1857 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • CDR3 / JUNCTION : .length = stop - start + 1
    #1858 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • CDR3 : productif sur résultat de Vidjil ou bien IMGT ?
    #1859 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Color by DBScan
    #1860 · created Nov 29, 2016 by Vidjil Team   old_tracker !-reflexion client dev-dead-code priority-2
    • 0
    updated Nov 29, 2016
  • liste de locus : faire mieux
    #1861 · created Nov 29, 2016 by Vidjil Team   old_tracker client client-ugly priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Menu 'patient' : open, save
    #1862 · created Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Plusieurs fois les check-box "CDR3-IMGT"
    #1863 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug priority-3-month repseq-IMGT
    • CLOSED
    • 0
    updated Nov 29, 2016
  • IMGT4Seg: les 10 séquences suivantes
    #1864 · created Nov 29, 2016 by Vidjil Team   !-hard priority-2 repseq-IMGT
    • 0
    updated Apr 16, 2018
  • Souris IGH Limoges
    #1865 · created Nov 29, 2016 by Vidjil Team   old_tracker LIM-Limoges bio-species priority-4-week
    • CLOSED
    • 0
    updated Jan 24, 2017
  • align : icon-spin4 pendant que cela tourne
    #1867 · created Nov 29, 2016 by Vidjil Team   old_tracker client-aligner priority-2
    • CLOSED
    • 1
    updated Apr 16, 2018
  • Les valeurs 5end et 4end dans .vidjil devraient être basées sur 1 / 1-based
    #1869 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client-aligner cpp priority-5-today repseq-formats
    • CLOSED
    • 0
    updated Jun 10, 2020
  • Déployer align.cgi : quand, comment ?
    #1871 · created Nov 29, 2016 by Vidjil Team   priority-2 server-admin server-cgi
    • CLOSED
    • 1
    updated Feb 09, 2021
  • API chargement d'un fichier depuis l'URL ne fonctionne pas
    #1872 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug priority-3-month server-api
    • CLOSED
    • 2
    updated Apr 16, 2018
  • Mauvais surlignement du J en l'absence de N
    #1874 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client-aligner priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Lancer IMGT dans un nouvel onglet ouvre les résultats sur le fichier CSV
    #1876 · created Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client-aligner priority-5-today repseq-IMGT
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Prise en compte de la central région pour la p-valeur : mauvaise idée pour choix du meilleur locus
    #1878 · created Nov 29, 2016 by Vidjil Team   Algo -- Important   !!-bug bio-analyze-more bio-e-value bio-germlines cpp-heuristic
    • 3
    updated Dec 04, 2020
  • Sortie JSON : remplacer 5end / ... par 5->end / ...
    #1881 · created Nov 29, 2016 by Vidjil Team   old_tracker cpp priority-5-today repseq-formats
    • CLOSED
    • 0
    updated Nov 29, 2016
  • C++
    #1882 · created Nov 29, 2016 by Vidjil Team   old_tracker cpp priority-5-today repseq-formats sub
    • CLOSED
    • 0
    updated Nov 29, 2016
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