Issues · vidjil / vidjil

New issue

Run / SampleSet / Tags ?

#1745 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion bio-metadata feature priority-3-month server-database server-sample-sets
- CLOSED
- 1
updated Feb 08, 2017
Charger / Sauver les .analysis dans des vues autres que Patient

#1746 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-reflexion BRU-Bruxelles priority-3-month
- 0
updated Nov 29, 2016
Export fasta : mettre la taille en bp

#1747 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client client-export priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Export des smaller clones

#1748 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Clustering par similarité

#1749 · created Nov 29, 2016 by Vidjil Team old_tracker client
- 0
updated Nov 30, 2016
Collaboration Montréal

#1750 · created Nov 29, 2016 by Vidjil Team old_tracker bio-species priority-2
- 0
updated Jan 24, 2017
Les boules sont trop petites

#1751 · created Nov 29, 2016 by Vidjil Team old_tracker
- CLOSED
- 0
updated Feb 02, 2017
Expliciter le N dans le nom de la séquence, noms courts/longs

#1752 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion PAN-Necker client-ergonomy client-export client-less-css feature priority-2
- CLOSED
- 0
updated Nov 29, 2016
Select All / Exporter tous les clones

#1754 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy client-export feature priority-2
- 0
updated Jan 18, 2019
EOF while reading FASTA/FASTQ file : être robuste

#1755 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-robust priority-2
- CLOSED
- 0
updated Nov 29, 2016
should-to-tap.sh veut un sed GNU ?

#1757 · created Nov 29, 2016 by Vidjil Team dev-build dev-tests dev-tests-should-get doc priority-2
- CLOSED
- 2
updated Apr 12, 2018
Vérifier 783d0b1, plus de reads en AMBIGUOUS

#1758 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
cluster fait disparaître les smaller clones

#1759 · created Nov 29, 2016 by Vidjil Team !!-bug client client-cluster priority-1-low
- 1
updated Jan 18, 2019
Une séquence ambiguë à tort ? -4

#1760 · created Nov 29, 2016 by Vidjil Team old_tracker bio-germlines-pseudo cpp-heuristic priority-1-low
- 0
updated Feb 04, 2017
controller/ view run

#1761 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server
- CLOSED
- 1
updated Apr 17, 2018
retrieve and display in a drop-list all .analysis who share at least one sample with the currently diplayed sample_set

#1762 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-3-month server
- 0
updated Nov 29, 2016
Factoriser les doublons entre list.js et segmenter.js

#1763 · created Nov 29, 2016 by Vidjil Team Web 2017.05 client client-aligner client-cloneList dev-policy dev-refactor priority-3-month
- CLOSED
- 15
updated May 23, 2017
Nomenclature originale, PMC2706371

#1764 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-standardization
- 0
updated Nov 29, 2016
clone.js, .getShortName() : setting pour afficher ou non les séquences

#1765 · created Nov 29, 2016 by Vidjil Team client client-cloneList client-ergonomy priority-2
- CLOSED
- 12
updated Nov 15, 2017
Notifications : mettre un lien vers le format de markdown (?) supporté sur la page d'édition

#1767 · created Nov 29, 2016 by Vidjil Team old_tracker client-notifications doc priority-2 server
- CLOSED
- 0
updated Nov 09, 2017
clones : null si pas de clones

#1773 · created Nov 29, 2016 by Vidjil Team !!-bug cpp priority-2 repseq-formats server-fuse
- 1
- 5
updated Feb 03, 2020
BJH, .doc

#1774 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Génération de données simulées

#1776 · created Nov 29, 2016 by Vidjil Team old_tracker com-paper priority-1-low
- CLOSED (MOVED)
- 0
updated Apr 16, 2018
Release 2016-02

#1777 · created Nov 29, 2016 by Vidjil Team old_tracker #-sensible priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Diagramme de Venn et log-log

#1778 · created Nov 29, 2016 by Vidjil Team old_tracker client client-log-log feature priority-2
- 0
updated Nov 19, 2021
xxx problème dans le nommage de certains clones

#1779 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go bio-germlines-pseudo client cpp-dynprog cpp-heuristic priority-4-week
- CLOSED
- 0
updated Feb 04, 2017
Indice/index de clonalité, diversité : par locus ?

#1781 · created Nov 29, 2016 by Vidjil Team Algo 2022.01 *-go PAN-Necker bio-control bio-diversity com-vw-vidjil-workshop cpp next-audio user-request
- CLOSED
- 2
- 2
updated Feb 17, 2022
Indice/index de clonalité, diversité, options et clustérisation

#1782 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-diversity cpp cpp-cluster priority-2
- 0
updated Nov 29, 2016
Indice/index de clonalité ou autres valeurs sur le time graph

#1783 · created Nov 29, 2016 by Vidjil Team !-reflexion bio-diversity client feature
- 1
updated Mar 21, 2019
Export ou import VDJtools

#1785 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-formats
- 0
updated Nov 29, 2016
Documentation

#1786 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Documentation : format de la doc, technique

#1787 · created Nov 29, 2016 by Vidjil Team old_tracker doc priority-2
- CLOSED
- 2
updated Sep 07, 2018
Server error sur URL mal formée

#1789 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server
- CLOSED
- 0
updated Nov 04, 2021
Séparation serveur / calcul

#1790 · created Nov 29, 2016 by Vidjil Team old_tracker
- CLOSED
- 0
updated Feb 02, 2017
VDDJ et sortie json

#1792 · created Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker cpp-finesegmenter priority-2 repseq-formats
- 0
updated Nov 29, 2016
VDDJ et overlap

#1793 · created Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker cpp-finesegmenter priority-2
- 0
updated Nov 29, 2016
make unit_browser est cassé : germline.js / germline.data

#1796 · created Nov 29, 2016 by Vidjil Team old_tracker bio-germlines dev-tests priority-4-week
- CLOSED
- 0
updated Apr 08, 2021
Avoir une interface pour le FineSegmenter d'un petit nombre de clones

#1797 · created Nov 29, 2016 by Vidjil Team old_tracker app-analyze client client-aligner cpp-finesegmenter feature priority-4-week
- CLOSED
- 1
updated Feb 02, 2017
should-vdj-to-tap.py: meilleur diff, détailler l'échec

#1800 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests feature priority-2
- 0
updated Nov 29, 2016
CD et autres choses utiles pour l'immuno en RNA-Seq

#1801 · created Nov 29, 2016 by Vidjil Team LYON-Sarah bio-analyze-more bio-control bio-germlines bio-germlines-pseudo bio-immuno bio-rnaseq cpp cpp-heuristic feature priority-2
- 8
updated Nov 19, 2021
Release: bioinfo.lifl.fr, www.vidjil.org/releases/

#1802 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Nov 20, 2018
Accepter plusieurs -g dans la ligne de commande

#1803 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Serveur lille, configuration

#1804 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 1
updated Apr 16, 2018
Tester align / cgi en test fonctionnel/intégration

#1805 · created Nov 29, 2016 by Vidjil Team dev-tests priority-2
- 4
updated Jan 08, 2021
should-vdj / Demo : TRA

#1807 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-2
- CLOSED
- 1
updated Apr 16, 2018
should-vdj / Demo : TRB

#1808 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-2
- CLOSED
- 1
updated Apr 16, 2018
Ne pas afficher "smaller clones" quand il n'y en a pas

#1809 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-2
- 0
updated Nov 29, 2016
Des séquences sont en reverse dans le .vidjil

#1812 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-export cpp priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Mieux tester les champs critiques de la sortie .vidjil

#1813 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-tests priority-2 repseq-formats
- CLOSED
- 1
updated Apr 16, 2018
Mise à jour germlines IMGT et contrôle

#1815 · created Nov 29, 2016 by Vidjil Team old_tracker dev-robust priority-2 repseq-IMGT
- CLOSED
- 0
updated Nov 29, 2016
Indicateur de progression / tâches en cours pour ce qui est lancé par task.py

#1817 · created Nov 29, 2016 by Vidjil Team cpp-speed server server-ergonomy server-task.py
- 0
updated Feb 28, 2019
Priorités pour les tâches

#1818 · created Nov 29, 2016 by Vidjil Team priority-2 server server-speed server-task.py
- 3
updated Mar 09, 2022
Mieux comprendre IMGT/JunctionAnalysis

#1819 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-IMGT
- 0
updated Jun 05, 2019
annotations : Quand il n'y a qu'un point, on ne voit pas les infos du sample

#1820 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
annotations: cela bouge toujours un peu quand on édite les infos du patient

#1821 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
./should-to-tap.sh stanford-fuse.should_get lève une OSError, mais le test passe

#1822 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-2
- CLOSED
- 0
updated Nov 29, 2016
CDR3: affichage dans le browser

#1823 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Séquences productives : frameshifts menant à des séquences non productives

#1824 · created Nov 29, 2016 by Vidjil Team bio-AA bio-CLL bio-productivity cpp
- CLOSED
- 9
updated Feb 17, 2021
annotations: affichage par défaut, en gris

#1825 · created Nov 29, 2016 by Vidjil Team old_tracker client com-first-time-user priority-3-month
- CLOSED
- 0
updated Dec 27, 2016
notable/1541 : FineSegmenter

#1828 · created Nov 29, 2016 by Vidjil Team !!-bug bio-analyze-more bio-large-deletion dev-tests-notable priority-2
- CLOSED
- 1
updated Jun 24, 2018
Avoir un exécutable sur un système propriétaire

#1829 · created Nov 29, 2016 by Vidjil Team old_tracker LIM-Limoges wont-fix
- CLOSED
- 0
updated Feb 02, 2017
Vidjil morning : /etc/update-motd.d/50-landscape-sysinfo

#1830 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-monitor
- CLOSED
- 1
updated Apr 16, 2018
Vidjil morning : le mettre dans les scripts d'install

#1831 · created Nov 29, 2016 by Vidjil Team priority-1-low server-monitor
- CLOSED
- 1
updated Oct 27, 2017
Meilleur monitoring

#1832 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-monitor
- CLOSED
- 1
updated Feb 09, 2021
VidjilInfoWriter, close: informations sur le lancement de MiXCR

#1833 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week repseq-mixcr repseq-platform
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter, close ? "log" de MiXCR

#1834 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter, putReads : gestion des locus

#1835 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
MiXCR : rebaser avant un pull request

#1837 · created Nov 29, 2016 by Vidjil Team doc repseq-mixcr repseq-platform
- 0
updated Aug 19, 2019
MiXCR : compilation, tests

#1838 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-mixcr repseq-platform
- 0
updated Nov 29, 2016
VidjilInfoWriter: "total" doit être le nombre de reads d'entrée

#1839 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Réuploader un fichier existant ne fonctionne pas

#1840 · created Nov 29, 2016 by Vidjil Team !!-bug priority-2 server server-upload
- CLOSED
- 5
updated Jan 11, 2017
VidjilFieldExtractor, extract : autres infos, FR1234/CDR123

#1841 · created Nov 29, 2016 by Vidjil Team client-aligner priority-2 repseq-formats repseq-mixcr repseq-platform
- 1
updated May 28, 2020
imseq

#1842 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-platform
- 0
updated Nov 29, 2016
/README.org : mettre à jour

#1843 · created Nov 29, 2016 by Vidjil Team old_tracker com priority-2
- CLOSED
- 1
updated Nov 20, 2018
should-vdj : syntaxe pour les alternatives / ambiguïtés

#1844 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests dev-tests-curated-vdj priority-2
- CLOSED
- 1
updated Apr 16, 2018
Mieux packager les releases algo, /README.md

#1845 · created Nov 29, 2016 by Vidjil Team com-first-time-user cpp priority-1-low
- 1
updated Aug 27, 2020
Icones, jenkins et autres

#1848 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build priority-2
- CLOSED
- 1
updated Aug 27, 2020
sample_set_run : API URL cassée

#1849 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
"upload list" : mettre "uploading icon-spin4" tant qu'il y a des uploads en cours

#1850 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- 0
updated Nov 29, 2016
VDJ-IMGT : trouver le nom

#1854 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Segmenter : souligné CD3-IMGT disparaît au survol

#1855 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
CDR3 / JUNCTION dans .getHtmlInfo (clone.js)

#1856 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 0
updated Nov 29, 2016
CDR3 / JUNCTION color by productive

#1857 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
CDR3 / JUNCTION : .length = stop - start + 1

#1858 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
CDR3 : productif sur résultat de Vidjil ou bien IMGT ?

#1859 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
Color by DBScan

#1860 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client dev-dead-code priority-2
- 0
updated Nov 29, 2016
liste de locus : faire mieux

#1861 · created Nov 29, 2016 by Vidjil Team old_tracker client client-ugly priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Menu 'patient' : open, save

#1862 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Plusieurs fois les check-box "CDR3-IMGT"

#1863 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-3-month repseq-IMGT
- CLOSED
- 0
updated Nov 29, 2016
IMGT4Seg: les 10 séquences suivantes

#1864 · created Nov 29, 2016 by Vidjil Team !-hard priority-2 repseq-IMGT
- 0
updated Apr 16, 2018
Souris IGH Limoges

#1865 · created Nov 29, 2016 by Vidjil Team old_tracker LIM-Limoges bio-species priority-4-week
- CLOSED
- 0
updated Jan 24, 2017
align : icon-spin4 pendant que cela tourne

#1867 · created Nov 29, 2016 by Vidjil Team old_tracker client-aligner priority-2
- CLOSED
- 1
updated Apr 16, 2018
Les valeurs 5end et 4end dans .vidjil devraient être basées sur 1 / 1-based

#1869 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner cpp priority-5-today repseq-formats
- CLOSED
- 0
updated Jun 10, 2020
Déployer align.cgi : quand, comment ?

#1871 · created Nov 29, 2016 by Vidjil Team priority-2 server-admin server-cgi
- CLOSED
- 1
updated Feb 09, 2021
API chargement d'un fichier depuis l'URL ne fonctionne pas

#1872 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-3-month server-api
- CLOSED
- 2
updated Apr 16, 2018
Mauvais surlignement du J en l'absence de N

#1874 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Lancer IMGT dans un nouvel onglet ouvre les résultats sur le fichier CSV

#1876 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-5-today repseq-IMGT
- CLOSED
- 0
updated Nov 29, 2016
Prise en compte de la central région pour la p-valeur : mauvaise idée pour choix du meilleur locus

#1878 · created Nov 29, 2016 by Vidjil Team Algo -- Important !!-bug bio-analyze-more bio-e-value bio-germlines cpp-heuristic
- 3
updated Dec 04, 2020
Sortie JSON : remplacer 5end / ... par 5->end / ...

#1881 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats
- CLOSED
- 0
updated Nov 29, 2016
C++

#1882 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016