Issues · vidjil / vidjil

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Couleurs dans le rapport exporté : conserver le color_by()

#1976 · created Nov 29, 2016 by Vidjil Team Web 2021.05 !!-annoying LIL-Lille client-color-by client-ergonomy client-rapport priority-3-month user-request
- CLOSED
- 2
- 12
updated Mar 17, 2021
maintenir le « color by » en changeant de patient

#1977 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Pouvoir fixer la fenêtre du segmenter avec beaucoup de séquences

#1978 · created Nov 29, 2016 by Vidjil Team LIL-Lille client-aligner client-ergonomy client-ugly priority-3-month
- CLOSED
- 3
updated Jan 18, 2017
Titre de la page HTML parfois faux ?

#1980 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
SampleSets : controlleurs génériques

#1983 · created Nov 29, 2016 by Vidjil Team priority-3-month
- CLOSED
- 0
updated May 19, 2017
Le -c segment devrait sortir un .vidjil

#1984 · created Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-finesegmenter priority-2
- CLOSED
- 0
updated Nov 29, 2016
Requêtes incessantes à scheduler_task et scheduler_worker

#1985 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server-database
- CLOSED
- 0
updated Dec 19, 2017
Ajouter l'organisme dans le fichier .vidjil

#1987 · created Nov 29, 2016 by Vidjil Team Algo 2017.03 LIM-Limoges TOU-Toulouse bio-germlines bio-species priority-2 repseq-formats
- CLOSED
- 1
- 3
updated Feb 02, 2017
Release 2016.09

#1991 · created Nov 29, 2016 by Vidjil Team old_tracker com cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
vidjil/segmenter: utiliser le .vidjil

#1993 · created Nov 29, 2016 by Vidjil Team app-analyze client-aligner priority-2
- CLOSED
- 1
updated Apr 11, 2017
Garder des séquences d'intérêt : -W / -@

#1997 · created Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-options priority-2
- CLOSED
- 0
updated Jan 17, 2019
Jenkins et SHOULD_*_EXPECTED_FAILS

#1999 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build dev-tests priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Redirection de / vers /browser en HTTPS

#2008 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server server-config
- CLOSED
- 0
updated Nov 29, 2016
CSS/JS manquant pour l'admin de dev.vidjil.org

#2009 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server server-config
- CLOSED
- 0
updated Nov 29, 2016
Erreur lors de l'annulation d'upload

#2010 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-2
- CLOSED
- 1
updated Dec 13, 2016
Un mauvais commit traine dans dev, à rebaser

#2013 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 1
updated Feb 01, 2017
Tester l'affichage des "smaller clones"

#2022 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client dev-tests-watir priority-2
- CLOSED
- 0
updated Nov 18, 2017
Merge reads et .fasta

#2023 · created Nov 29, 2016 by Vidjil Team priority-2 server-pre-process wont-fix
- CLOSED
- 1
updated Apr 16, 2018
Les smaller clones disparaissent de la liste dès qu'on les survole

#2025 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-cloneList priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Beaucoup de FAILED dans le Vidjil Morning du jour

#2027 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated May 23, 2018
Modifier le contrôleur du segmenteur pour permettre l'interaction avec la page d'Armand

#2032 · created Nov 29, 2016 by Vidjil Team app-analyze priority-3-month server
- CLOSED
- 2
updated Apr 12, 2017
L'alignement multiple plante quand la première séquence est retirée

#2041 · created Dec 02, 2016 by Mikaël Salson !!-bug *-go LIL-Lille client-aligner priority-3-month server-cgi user-request
- CLOSED
- 1
- 3
updated Apr 03, 2019
Après un compare samples, aucun système n'est sélectionné par défaut dans le scatterplot

#2044 · created Dec 06, 2016 by Mikaël Salson !!-bug *-go client-grid server-compare-samples
- CLOSED
- 1
updated Dec 13, 2016
La séquence n'est pas ajoutée au segmenteur lorsqu'elle n'est pas segmentée

#2045 · created Dec 06, 2016 by Mikaël Salson !!-bug client-aligner
- CLOSED
- 2
updated Oct 23, 2019
Ne pas recalculer à chaque affichage les positions de features basées sur des chaînes de caractères

#2047 · created Dec 08, 2016 by Mathieu Giraud bio-AA bio-primers client client-aligner
- CLOSED
- 3
updated Feb 16, 2018
Visualisation de la liste des pre-process

#2048 · created Dec 08, 2016 by Mathieu Giraud client-database server server-database server-pre-process
- CLOSED
- 2
updated Dec 14, 2016
Faire une erreur propre lorsqu'on utilise un client frais, sans avoir fait `make germline`

#2050 · created Dec 08, 2016 by Ghost User *-go client client-menu doc
- CLOSED
- 6
updated Dec 08, 2016
Avoir une variable DIR_PEAR pour le preprocess pear

#2051 · created Dec 08, 2016 by Mikaël Salson dev-robust server server-config server-pre-process
- CLOSED
- 0
updated Jan 04, 2017
Mise à jour de web2py et nouvelles fonctionnalités

#2055 · created Dec 12, 2016 by Mathieu Giraud dev-policy server server-task.py
- CLOSED
- 1
updated Jan 22, 2020
Afficher les mutations synonymes/silencieuses dans le segmenteur

#2056 · created Dec 12, 2016 by Mikaël Salson CLL-2018-septembre LIL-Lille Paris-Pitié bio-AA bio-CLL client client-aligner feature user-request
- CLOSED
- 1
- 13
updated Apr 18, 2019
Formulaire admin pour modifier un groupe

#2057 · created Dec 12, 2016 by Mikaël Salson client-ergonomy server server-admin server-groups
- CLOSED
- 0
updated Jan 31, 2017
Tutorial : Mettre un fichier démo de L3 sans analyse déjà faite

#2058 · created Dec 12, 2016 by Mikaël Salson Web 2017.11 com-first-time-user doc shell-log
- CLOSED
- 9
updated Nov 20, 2017
Pouvoir trier les axes par une liste arbitraire

#2061 · created Dec 13, 2016 by Mathieu Giraud client client-axis client-ergonomy
- CLOSED
- 1
updated Jun 05, 2021
Ajouter un bouton "export Fasta" dans le segmenteur autonome

#2067 · created Dec 15, 2016 by Mathieu Giraud app-analyze client client-aligner client-export
- CLOSED
- 5
updated Apr 03, 2017
Retour à l'utilisateur quand on envoie une requête sur le segmenteur autonome 2 of 2 tasks completed

#2070 · created Dec 15, 2016 by Mikaël Salson app-analyze client client-ergonomy
- CLOSED
- 4
updated Feb 02, 2017
Coûts du FineSegmenter et documentation de -f

#2076 · created Dec 19, 2016 by Mathieu Giraud Algo 2017.11 *-go cpp cpp-finesegmenter cpp-options doc
- CLOSED
- 1
- 1
updated Nov 17, 2017
Sur la page d'un utilisateur, voir aussi le groupe "uniquely assigned to user Xxx"

#2077 · created Dec 20, 2016 by Mathieu Giraud server server-groups
- CLOSED
- 0
updated Jan 31, 2017
problème d'upload a l'utilisation de vidjil en diagnostic a lille

#2079 · created Dec 23, 2016 by Ghost User !-hard LIL-Lille server-upload
- CLOSED (MOVED)
- 0
updated Dec 29, 2016
vidjil-to-fasta.py, object of type 'NoneType' has no len()

#2088 · created Jan 03, 2017 by Mathieu Giraud !!-bug
- CLOSED
- 2
updated Jan 03, 2017
vidjil-to-fasta.py : erreur "unsupported operand type(s) for +: 'NoneType' and 'int'" lors de l'exécution

#2089 · created Jan 04, 2017 by Tatiana Rocher !!-bug
- CLOSED
- 0
updated Jan 04, 2017
Erreur de chargement de fichier sans association à un sample set

#2090 · created Jan 05, 2017 by Ryan Herbert !!-bug client server server-sample-sets
- CLOSED
- 2
updated Mar 14, 2017
L'axe "V distribution" ne fonctionne pas sur Stanford_S22

#2091 · created Jan 09, 2017 by Mathieu Giraud !!-bug client client-axis client-grid
- CLOSED
- 0
updated Jan 12, 2017
Sélection multiple en cliquant sur le label de l'axe y

#2092 · created Jan 09, 2017 by Mathieu Giraud client client-bar client-grid feature
- CLOSED
- 2
updated May 22, 2017
Manipulation des URL: comment le faire ?

#2096 · created Jan 10, 2017 by Mathieu Giraud client client-api
- CLOSED
- 2
updated Mar 30, 2017
API/URL: ?clones=1,15,54

#2097 · created Jan 10, 2017 by Mathieu Giraud client client-api
- CLOSED
- 1
- 2
updated Mar 17, 2017
Téléchargement des fichiers fused et analyse

#2102 · created Jan 12, 2017 by Mikaël Salson !!-bug server server-api server-sample-sets
- CLOSED
- 0
updated Mar 22, 2017
Supprimer les fichiers résultats lorsqu'on ré-uploade un fichier de séquences

#2103 · created Jan 12, 2017 by Mikaël Salson LIL-Lille server server-fuse server-upload
- CLOSED
- 10
updated May 22, 2017
Ne pas avoir de séquences IMGT dans le package vidjil-germline

#2108 · created Jan 17, 2017 by Mikaël Salson #-legal #-sensible *-go bio-germlines dev-packaging repseq-IMGT
- CLOSED
- 3
updated Jan 18, 2017
Le menu filter s'affiche partiellement

#2109 · created Jan 17, 2017 by Ghost User !!-bug client client-menu
- CLOSED
- 11
updated May 12, 2017
Ne pas utiliser innerHTML pour supprimer du contenu

#2127 · created Jan 24, 2017 by Ryan Herbert client-speed
- CLOSED
- 3
updated Apr 25, 2017
Ranger les germlines par espèces (algo)

#2132 · created Jan 26, 2017 by Mathieu Giraud Algo 2017.03 bio-germlines bio-species cpp dev-build
- CLOSED
- 0
updated Feb 02, 2017
Visualiser FR1 et autres dans le client

#2135 · created Jan 27, 2017 by Mathieu Giraud Paris-Pitié bio-CLL client-aligner feature
- CLOSED
- 4
updated Apr 08, 2021
Sélection flexible des features à afficher dans l'aligneur

#2136 · created Jan 27, 2017 by Mathieu Giraud client client-aligner client-ergonomy feature
- CLOSED
- 2
updated Apr 08, 2021
Donner accès aux fichiers produit par les logiciels RepSeq utilisés par Vidjil

#2141 · created Jan 30, 2017 by Mikaël Salson Web 2017.05 +-deploy client-export feature priority-3-month server
- CLOSED
- 1
- 7
updated May 22, 2017
Supprimer, -G, -g germlines, et promouvoir -g germlines/homo-sapiens.h

#2147 · created Jan 31, 2017 by Mathieu Giraud bio-germlines cpp cpp-options wont-fix
- CLOSED
- 3
updated Aug 28, 2017
Voir le groupe dans la liste des sample_sets, pour les utilisateurs

#2150 · created Feb 01, 2017 by Mathieu Giraud +-merge BRU-Bruxelles feature server server-groups server-sample-sets
- CLOSED
- 1
- 2
updated Mar 16, 2017
Le nouveau format de germlines casse les builds sur Jenkins

#2154 · created Feb 01, 2017 by Mikaël Salson !!-bug bio-germlines dev-ci
- CLOSED
- 7
updated Feb 22, 2017
Les paramètres passés en ligne de commande devraient avoir la priorité sur le .g

#2156 · created Feb 01, 2017 by Mathieu Giraud Algo 2017.07 cpp cpp-options
- CLOSED
- 4
updated Jun 18, 2018
Test should-get-tests/vidjil-error-w-small.should-get

#2157 · created Feb 02, 2017 by Mathieu Giraud Algo 2017.03 cpp cpp-options dev-robust dev-tests
- CLOSED
- 3
updated Mar 08, 2017
Mieux gérer les choses à faire avant la prochaine release

#2158 · created Feb 02, 2017 by Mathieu Giraud dev-build dev-ci dev-gitlab dev-policy dev-tests dev-tests-should-get
- CLOSED
- 2
updated Mar 08, 2017
Ajouter un clone: interface utilisateur et appel au segmenteur 2 of 2 tasks completed

#2160 · created Feb 02, 2017 by Mathieu Giraud LIL-Lille PRA-Prague app-analyze client feature
- CLOSED
- 2
updated Mar 01, 2017
Le nom du fichier n'est pas le bon après avoir "try again" quand l'upload echoue

#2164 · created Feb 02, 2017 by Ryan Herbert !!-bug server server-upload
- CLOSED
- 2
updated Nov 04, 2021
Un fichier deleted est encore téléchargeable

#2169 · created Feb 06, 2017 by Thonier Florian
- CLOSED
- 5
updated Feb 08, 2017
Identifiants incomplets pour les germlines avec up/downstreams

#2173 · created Feb 09, 2017 by Mathieu Giraud !!-bug +-working bio-germlines
- CLOSED
- 5
updated Feb 10, 2017
Liste et segmenteur : affichage flexible d'axes

#2175 · created Feb 09, 2017 by Mathieu Giraud !-hard !-reflexion client client-aligner client-axis client-cloneList feature
- CLOSED
- 1
- 4
updated May 11, 2017
'syntax error near unexpected token' lors d'un should-vdj

#2178 · created Feb 14, 2017 by Mathieu Giraud dev-tests dev-tests-curated-vdj
- CLOSED
- 2
updated Feb 16, 2017
Mettre à jour l'aide

#2179 · created Feb 14, 2017 by Mathieu Giraud Algo 2017.03 +-working cpp cpp-options doc
- CLOSED
- 0
updated Feb 14, 2017
should-to-tap: Ne pas faire la shell-expansion sur la ligne "Launching"

#2183 · created Feb 14, 2017 by Mathieu Giraud dev-tests dev-tests-should-get priority-1-low
- CLOSED
- 2
updated Apr 18, 2018
Fichier prétendument supprimé lorsqu'on visualise les résultats

#2185 · created Feb 15, 2017 by Mikaël Salson BEL-Belfast server
- CLOSED
- 1
updated Feb 17, 2017
Mauvais CDR3 trouvé lorsqu'on utilise des germlines non gappés

#2187 · created Feb 16, 2017 by Mikaël Salson bio-AA cpp-finesegmenter cpp-options doc
- CLOSED
- 5
updated Feb 05, 2018
Design de la pagination

#2188 · created Feb 16, 2017 by Mikaël Salson bikeshedding client-database client-design server
- CLOSED
- 2
updated Apr 28, 2017
API URL: plot/bar, mettre tout ce qui concerne le scatterplot dans un seul paramètre

#2191 · created Feb 18, 2017 by Mathieu Giraud bikeshedding client client-api
- CLOSED
- 1
- 0
updated Mar 17, 2017
Tests browser

#2194 · created Feb 18, 2017 by Mathieu Giraud dev-build dev-tests
- CLOSED
- 2
updated Feb 21, 2017
patient/index et run/index sont-ils encore utiles ?

#2198 · created Feb 22, 2017 by Mikaël Salson dev-dead-code dev-refactor server server-sample-sets
- CLOSED
- 3
updated Apr 28, 2017
Un patient n'est pas visible des admins

#2199 · created Feb 22, 2017 by Mikaël Salson !!-bug *-go server
- CLOSED
- 7
updated May 12, 2017
Color by clone

#2205 · created Mar 01, 2017 by Mathieu Giraud Web 2017.03 PAN-Necker PAR-Debré client client-axis client-bar feature priority-4-week
- CLOSED
- 0
updated Mar 22, 2017
Tests fonctionnels browser

#2206 · created Mar 02, 2017 by Mathieu Giraud dev-tests-watir
- CLOSED
- 3
updated Nov 18, 2017
Merger dans dev les branches de février

#2209 · created Mar 02, 2017 by Mathieu Giraud
- CLOSED
- 4
updated Mar 09, 2017
Ajout de séquence externe : séquences non segmentables

#2211 · created Mar 02, 2017 by Mathieu Giraud +-working app-analyze cpp repseq-formats
- CLOSED
- 0
updated Mar 07, 2017
Boucle infinie dans le calcul de la représentative

#2214 · created Mar 02, 2017 by Mikaël Salson Algo 2017.03 !!-bug cpp cpp-representative
- CLOSED
- 1
- 4
updated Mar 08, 2017
Vidjil ne fonctionne pas lorsque lancé depuis le contrôleur segmenter.py

#2215 · created Mar 02, 2017 by Mikaël Salson !!-bug app-analyze server-uwsgi
- CLOSED
- 8
updated Mar 07, 2017
Algo: trimSequence ne fait pas ce qu'on attend d'elle

#2217 · created Mar 03, 2017 by Mikaël Salson Algo 2017.03 !!-bug +-merge cpp cpp-representative
- CLOSED
- 1
- 0
updated Mar 08, 2017
should-get: timeout

#2219 · created Mar 07, 2017 by Mathieu Giraud dev-tests
- CLOSED
- 1
updated Jan 26, 2021
Séquences productives : codon stop

#2220 · created Mar 07, 2017 by Mathieu Giraud Algo 2017.03 bio-AA bio-CLL cpp
- CLOSED
- 0
updated Mar 07, 2017
Segmentation fault lorsque la représentative est plus courte que la graîne

#2224 · created Mar 07, 2017 by Mikaël Salson Algo 2017.07 !!-bug cpp
- CLOSED
- 3
updated Aug 28, 2017
Déplacer focus et hide dans model.js, et les tester

#2228 · created Mar 08, 2017 by Mathieu Giraud *-go +-working dev-refactor dev-tests
- CLOSED
- 0
updated Mar 15, 2017
Tests fonctionnels client

#2229 · created Mar 08, 2017 by Mathieu Giraud dev-tests dev-tests-watir
- CLOSED
- 1
updated Nov 18, 2017
Tagguer le IGH D7-27-0/92/0-J1 non recombiné d'une manière particulière

#2232 · created Mar 09, 2017 by Mathieu Giraud Algo 2018.08 Paris-Pitié bio-analyze-more bio-primers cpp priority-1-low
- CLOSED
- 1
- 5
updated Jan 15, 2021
Éditer les samples sets d'un sample : ajouter, supprimer une association à un set

#2234 · created Mar 09, 2017 by Mikaël Salson LIL-Immuno feature server server-sample-sets user-request
- CLOSED
- 6
updated Mar 11, 2019
Statistiques sur l'ensemble des patients/runs/groupe d'échantillon (vue générique)

#2235 · created Mar 09, 2017 by Mathieu Giraud MON-Monza PAN-Necker Paris-Pitié bio-control dev-dead-code server-qc-stats user-request
- CLOSED
- 16
updated Sep 14, 2018
Fournir un module python qui sait lire, vérifier et générer des fichiers vidjil

#2240 · created Mar 09, 2017 by Ryan Herbert collaboration dev-refactor repseq-platform server-fuse server-qc-stats
- CLOSED
- 8
updated Jun 12, 2019
Fort pourcentage de séquences non assemblées par PEAR

#2242 · created Mar 09, 2017 by Mikaël Salson Paris-Pitié bio-analyze-more server-pre-process
- CLOSED
- 5
updated Nov 22, 2021
Inventaire des warnings dans le fichier .vidjil et ailleurs

#2247 · created Mar 13, 2017 by Mathieu Giraud !-reflexion bikeshedding bio-control client client-warning doc repseq-formats warning-meta
- CLOSED
- 11
updated Feb 03, 2021
Tests should-vdj

#2248 · created Mar 13, 2017 by Mathieu Giraud Algo 2017.03 +-working dev-tests-curated-vdj
- CLOSED
- 2
updated Mar 13, 2017
Build "make shouldvdj" sous Travis

#2253 · created Mar 15, 2017 by Mathieu Giraud cpp dev-build dev-ci
- CLOSED
- 3
updated Mar 16, 2017
Vitesse des tests et lancement Stanford

#2254 · created Mar 15, 2017 by Mathieu Giraud Algo 2017.07 cpp dev-build dev-ci dev-tests dev-tests-should-get tests-speed
- CLOSED
- 16
updated Aug 28, 2017
Simplifier `make release`

#2255 · created Mar 15, 2017 by Mathieu Giraud Algo 2017.11 cpp dev-build dev-ci
- CLOSED
- 1
- 9
updated Mar 05, 2018
Reconfigurer Vidjil-benchmark / tracer les temps de vijdil-algo à travers les releases

#2257 · created Mar 16, 2017 by Mathieu Giraud cpp-speed dev-ci
- CLOSED
- 5
updated May 07, 2020
Vijdil-benchmark: +35% de mémoire en janvier

#2258 · created Mar 16, 2017 by Mathieu Giraud cpp cpp-aho cpp-mem
- CLOSED
- 3
updated Mar 16, 2017
germlines-classes.data pour Sarah

#2261 · created Mar 16, 2017 by Mathieu Giraud bio-species
- CLOSED
- 0
updated Feb 09, 2021