Issues · vidjil / vidjil

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Avoir un exécutable sur un système propriétaire

#1829 · created Nov 29, 2016 by Vidjil Team old_tracker LIM-Limoges wont-fix
- CLOSED
- 0
updated Feb 02, 2017
Vidjil morning : /etc/update-motd.d/50-landscape-sysinfo

#1830 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-monitor
- CLOSED
- 1
updated Apr 16, 2018
Vidjil morning : le mettre dans les scripts d'install

#1831 · created Nov 29, 2016 by Vidjil Team priority-1-low server-monitor
- CLOSED
- 1
updated Oct 27, 2017
Meilleur monitoring

#1832 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-monitor
- CLOSED
- 1
updated Feb 09, 2021
VidjilInfoWriter, close: informations sur le lancement de MiXCR

#1833 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week repseq-mixcr repseq-platform
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- 0
updated Nov 29, 2016
VidjilInfoWriter, close ? "log" de MiXCR

#1834 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
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- 0
updated Nov 29, 2016
VidjilInfoWriter, putReads : gestion des locus

#1835 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter: "total" doit être le nombre de reads d'entrée

#1839 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Réuploader un fichier existant ne fonctionne pas

#1840 · created Nov 29, 2016 by Vidjil Team !!-bug priority-2 server server-upload
- CLOSED
- 5
updated Jan 11, 2017
/README.org : mettre à jour

#1843 · created Nov 29, 2016 by Vidjil Team old_tracker com priority-2
- CLOSED
- 1
updated Nov 20, 2018
should-vdj : syntaxe pour les alternatives / ambiguïtés

#1844 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests dev-tests-curated-vdj priority-2
- CLOSED
- 1
updated Apr 16, 2018
Icones, jenkins et autres

#1848 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build priority-2
- CLOSED
- 1
updated Aug 27, 2020
sample_set_run : API URL cassée

#1849 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
VDJ-IMGT : trouver le nom

#1854 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Segmenter : souligné CD3-IMGT disparaît au survol

#1855 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
CDR3 / JUNCTION dans .getHtmlInfo (clone.js)

#1856 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
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- 0
updated Nov 29, 2016
CDR3 / JUNCTION color by productive

#1857 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
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- 0
updated Nov 29, 2016
CDR3 / JUNCTION : .length = stop - start + 1

#1858 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
CDR3 : productif sur résultat de Vidjil ou bien IMGT ?

#1859 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
liste de locus : faire mieux

#1861 · created Nov 29, 2016 by Vidjil Team old_tracker client client-ugly priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Menu 'patient' : open, save

#1862 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Plusieurs fois les check-box "CDR3-IMGT"

#1863 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-3-month repseq-IMGT
- CLOSED
- 0
updated Nov 29, 2016
Souris IGH Limoges

#1865 · created Nov 29, 2016 by Vidjil Team old_tracker LIM-Limoges bio-species priority-4-week
- CLOSED
- 0
updated Jan 24, 2017
align : icon-spin4 pendant que cela tourne

#1867 · created Nov 29, 2016 by Vidjil Team old_tracker client-aligner priority-2
- CLOSED
- 1
updated Apr 16, 2018
Les valeurs 5end et 4end dans .vidjil devraient être basées sur 1 / 1-based

#1869 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner cpp priority-5-today repseq-formats
- CLOSED
- 0
updated Jun 10, 2020
Déployer align.cgi : quand, comment ?

#1871 · created Nov 29, 2016 by Vidjil Team priority-2 server-admin server-cgi
- CLOSED
- 1
updated Feb 09, 2021
API chargement d'un fichier depuis l'URL ne fonctionne pas

#1872 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-3-month server-api
- CLOSED
- 2
updated Apr 16, 2018
Mauvais surlignement du J en l'absence de N

#1874 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Lancer IMGT dans un nouvel onglet ouvre les résultats sur le fichier CSV

#1876 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-5-today repseq-IMGT
- CLOSED
- 0
updated Nov 29, 2016
Sortie JSON : remplacer 5end / ... par 5->end / ...

#1881 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats
- CLOSED
- 0
updated Nov 29, 2016
C++

#1882 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016
Fuse

#1883 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016
Browser

#1884 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016
doc/analysis-format.org

#1885 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016
Browser: faire que cela marche avec .vidjil d'avant

#1886 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-5-today repseq-formats sub
- CLOSED
- 0
updated Nov 29, 2016
Warning n'apparaît pas dans le segmenter

#1888 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Après merge des séquences, les séquences ne sont plus clickables/comparables

#1891 · created Nov 29, 2016 by Vidjil Team old_tracker BRU-Bruxelles client-aligner client-cloneList com-vw-vidjil-workshop priority-3-month
- CLOSED
- 1
- 1
updated Apr 18, 2018
Ellipsis à faire sur les titres des samples dans le graphe (ça dépasse et c'est moche)

#1892 · created Nov 29, 2016 by Vidjil Team old_tracker client-ugly priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Export graph : ne fonctionne pas si le graphe est caché

#1893 · created Nov 29, 2016 by Vidjil Team
- CLOSED
- 1
updated Apr 16, 2018
Demande de confirmation avant de changer de patient

#1894 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug
- CLOSED
- 1
updated Apr 16, 2018
mode serveur : menu du browser ambigue

#1897 · created Nov 29, 2016 by Vidjil Team
- CLOSED
- 1
updated Apr 16, 2018
Scatterplot : raccourcis en chiffre lorsque >9 ?

#1898 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-keyboard priority-2
- CLOSED
- 0
updated Nov 29, 2016
export fasta : retirer les point dans les séquences des germlines

#1899 · created Nov 29, 2016 by Vidjil Team BRU-Bruxelles bio-germlines client-export priority-2
- CLOSED
- 1
- 0
updated Jul 24, 2018
rapport pdf : n'affiche pas l'état actuel du graphe (à voir avec Aurélie)

#1900 · created Nov 29, 2016 by Vidjil Team old_tracker client-rapport
- CLOSED
- 1
updated Apr 14, 2017
/mnt/data-rby ne répond pas

#1902 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Le log est celui d'analysis et pas celui du fuse

#1903 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week repseq-formats server-fuse
- CLOSED
- 0
updated Nov 29, 2016
multi sélection : bug affichage dans le segmenteur

#1904 · created Nov 29, 2016 by Vidjil Team !!-bug client-aligner priority-2
- CLOSED
- 1
updated Apr 16, 2018
Les notifications (en bas à droite) sont cachées par la page serveur

#1905 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-database client-notifications priority-5-today
- CLOSED
- 0
updated Nov 09, 2017
Un utilisateur standard ne peut pas supprimer un fichier qu'il a uploadé

#1906 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server-database
- CLOSED
- 0
updated Nov 29, 2016
Suppression et modification impossible des patients sur rbx

#1907 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-database priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
Suppression de patients : mauvais nombre de fichier indiqué

#1908 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
CI pousse sur test.vidjil.org même quand les tests échouent

#1909 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug dev-ci priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Le colorby ne change pas entre deux analyses

#1910 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Nov 29, 2017
Browser help : 404

#1912 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server
- CLOSED
- 0
updated Nov 29, 2016
Affichage de la boîte d'information en haut à gauche

#1913 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
AAP Hétérogénéité clonale

#1916 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Taille des fichiers en BD incorrecte (pour les gros fichiers)

#1917 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-3-month server-database
- CLOSED
- 0
updated Nov 29, 2016
Labels du scatterplot sont à ? pour les gènes

#1918 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-grid priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Retour à l'utilisateur lorsque la requête prend un peu de temps

#1920 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-3-month server
- CLOSED
- 1
updated Nov 24, 2017
Résumé JOBIM

#1923 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
fuse.py garde les infos du meilleur top

#1926 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server-fuse wont-fix
- CLOSED
- 0
updated Aug 20, 2019
Liste d'upload cachée par la fenêtre du serveur

#1932 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-ergonomy priority-3-month server-database
- CLOSED
- 0
updated Nov 29, 2016
2 commits prod-server non mergés

#1933 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
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- 0
updated Nov 29, 2016
file/add.html: Server error sur le auto-complete patient/run

#1934 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
IndexError: list index out of range dans le contrôleur get_data

#1935 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server-database
- CLOSED
- 0
updated Nov 29, 2016
representative-N.should-get

#1937 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
VidjilAuth.get_permission(): le cache est-il fonctionnel ?

#1939 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server-auth
- CLOSED
- 0
updated Jan 31, 2017
Lorsque une partie des fichiers est runné, des métadata des mauvais fichiers sont affichés

#1940 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug BRU-Bruxelles priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Index/diversité et fuse.py

#1941 · created Nov 29, 2016 by Vidjil Team !!-bug bio-diversity priority-3-month server-fuse
- CLOSED
- 1
- 3
updated Jul 24, 2018
algo: Release 2016-07

#1942 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Jun 10, 2020
Erreurs serveurs dans les runs

#1946 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Le format du champs seg a évolué : comment doit-il être ?

#1947 · created Nov 29, 2016 by Vidjil Team old_tracker *-go doc priority-3-month repseq-formats
- CLOSED
- 0
updated Nov 29, 2016
Quand on a le choix entre plusieurs points, choisit-on vraiment la représentative la plus pertinente ?

#1949 · created Nov 29, 2016 by Vidjil Team !-reflexion cpp-representative server-fuse
- CLOSED
- 1
updated Aug 20, 2019
Bug indéterminé sur la vue d'un sample set

#1953 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week server-sample-sets
- CLOSED
- 0
updated Mar 14, 2017
Rendre lisible les erreurs javascript

#1954 · created Nov 29, 2016 by Vidjil Team old_tracker *-go dev-robust priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Les identifiants de clones ne sont pas uniques pour MiXCR

#1955 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion priority-4-week repseq-mixcr server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Compare samples ne fonctionne pas pour un run

#1957 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server-database server-sample-sets
- CLOSED
- 0
updated Mar 14, 2017
Les valeurs seg.5/4/3 sont désormais basées sur 1 : mettre à jour le browser

#1958 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-5-today repseq-formats
- CLOSED
- 0
updated Jun 10, 2020
Tutorial

#1959 · created Nov 29, 2016 by Vidjil Team old_tracker com-first-time-user doc priority-5-today
- CLOSED
- 0
updated Dec 27, 2016
Relancer un pre-process qui a échoué

#1960 · created Nov 29, 2016 by Vidjil Team feature priority-2 server server-pre-process
- CLOSED
- 1
updated May 19, 2017
Erreur la page des logs lorsque connecté en tant que Aurélie

#1962 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today server
- CLOSED
- 0
updated Nov 29, 2016
doc/analysis-example, make, test fuse

#1965 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build dev-tests priority-2
- CLOSED
- 0
updated Nov 29, 2016
Les infos du sample n'apparaissent pas dans l'analysis

#1966 · created Nov 29, 2016 by Vidjil Team !!-bug *-go client client-export priority-2
- CLOSED
- 4
updated Jan 03, 2017
Repasser en -t 0 par défaut au lieu de -t 100 (trim)

#1967 · created Nov 29, 2016 by Vidjil Team bio-trim priority-4-week
- CLOSED
- 0
updated Oct 31, 2017
calcul representative, arrêt length_longest_run, quality et vitesse

#1969 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-representative cpp-speed priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Autodelete fonctionne à moitié ?

#1973 · created Nov 29, 2016 by Vidjil Team !!-bug priority-3-month server-database
- CLOSED
- 1
updated Oct 26, 2017
Nouvelle dimension 'nb samples with this clone', comparaison de samples

#1974 · created Nov 29, 2016 by Vidjil Team old_tracker client-axis client-grid priority-3-month
- CLOSED
- 0
updated Nov 26, 2019
Nouvelle vue pour comparer beaucoup de samples

#1975 · created Nov 29, 2016 by Vidjil Team app-stats client client-views priority-2 server-compare-samples
- CLOSED
- 1
updated Dec 04, 2020
Couleurs dans le rapport exporté : conserver le color_by()

#1976 · created Nov 29, 2016 by Vidjil Team Web 2021.05 !!-annoying LIL-Lille client-color-by client-ergonomy client-rapport priority-3-month user-request
- CLOSED
- 2
- 12
updated Mar 17, 2021
maintenir le « color by » en changeant de patient

#1977 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Pouvoir fixer la fenêtre du segmenter avec beaucoup de séquences

#1978 · created Nov 29, 2016 by Vidjil Team LIL-Lille client-aligner client-ergonomy client-ugly priority-3-month
- CLOSED
- 3
updated Jan 18, 2017
Titre de la page HTML parfois faux ?

#1980 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- CLOSED
- 1
updated Apr 16, 2018
SampleSets : controlleurs génériques

#1983 · created Nov 29, 2016 by Vidjil Team priority-3-month
- CLOSED
- 0
updated May 19, 2017
Le -c segment devrait sortir un .vidjil

#1984 · created Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-finesegmenter priority-2
- CLOSED
- 0
updated Nov 29, 2016
Requêtes incessantes à scheduler_task et scheduler_worker

#1985 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server-database
- CLOSED
- 0
updated Dec 19, 2017
Ajouter l'organisme dans le fichier .vidjil

#1987 · created Nov 29, 2016 by Vidjil Team Algo 2017.03 LIM-Limoges TOU-Toulouse bio-germlines bio-species priority-2 repseq-formats
- CLOSED
- 1
- 3
updated Feb 02, 2017
Release 2016.09

#1991 · created Nov 29, 2016 by Vidjil Team old_tracker com cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
vidjil/segmenter: utiliser le .vidjil

#1993 · created Nov 29, 2016 by Vidjil Team app-analyze client-aligner priority-2
- CLOSED
- 1
updated Apr 11, 2017
Garder des séquences d'intérêt : -W / -@

#1997 · created Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-options priority-2
- CLOSED
- 0
updated Jan 17, 2019
Jenkins et SHOULD_*_EXPECTED_FAILS

#1999 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build dev-tests priority-4-week
- CLOSED
- 0
updated Nov 29, 2016