Issues · vidjil / vidjil

New issue

Ajouter une colonne pourcentage par locus dans la liste des clones

#3876 · created Mar 25, 2019 by Thonier Florian !-reflexion client client-axis client-cloneList feature
- 2
updated Mar 28, 2019
Mettre à jour la doc sur "voir tous les clones" et sur "get reads" / récupérer les reads

#3877 · created Mar 27, 2019 by Mathieu Giraud *-go com doc
- 6
updated Sep 24, 2019
My Account: Pouvoir accéder facilement aux dernières analyses effectuées

#3880 · created Mar 29, 2019 by Anne de Septenville server-my-account
- CLOSED
- 1
- 4
updated Dec 10, 2020
Doc : add germline genes, hypermutations...

#3881 · created Mar 29, 2019 by Mathieu Giraud *-go bio-CLL doc
- 0
updated Mar 29, 2019
Flex

#3884 · created Apr 02, 2019 by Mathieu Giraud client client-less-css client-responsive
- 1
updated Aug 27, 2020
Intro.js ou autres

#3885 · created Apr 02, 2019 by Mathieu Giraud !-reflexion com com-first-time-user wont-fix
- 1
updated Mar 19, 2020
Testing spike-normalization.py

#3886 · created Apr 02, 2019 by Mathieu Giraud Apr 24, 2019 bio-mrd bio-spikes client-normalization dev-tests-should-get
- CLOSED
- 6
updated Jan 19, 2021
vidjil-algo: parse config.labels within CL11_json

#3887 · created Apr 02, 2019 by Mathieu Giraud !-hard cpp cpp-options priority-1-low
- 1
updated Apr 02, 2019
"to CloneDB" fait disparaître l'affichage dans le panneau supérieur

#3888 · created Apr 02, 2019 by Anne de Septenville !!-bug *-go Paris-Pitié app-clonedb client client-bar
- 1
- 10
updated Jun 09, 2020
Actualiser régulièrement la CloneDB

#3889 · created Apr 02, 2019 by Anne de Septenville Paris-Pitié app-clonedb user-request
- 6
updated Dec 13, 2019
Changement de dénomination des clones sans VDJ ?

#3890 · created Apr 02, 2019 by Anne de Septenville Algo 2019.10 !!-bug bio-germlines-pseudo client client-ugly cpp cpp-export
- CLOSED
- 1
- 19
updated Mar 25, 2020
Release 2019.04

#3891 · created Apr 02, 2019 by Mathieu Giraud Algo 2019.04 Apr 3, 2019 cpp
- CLOSED
- 16
updated May 17, 2019
Roadmap à long terme

#3894 · created Apr 03, 2019 by Mathieu Giraud #-quality +-roadmap com dev-policy doc support-policy
- CLOSED
- 2
updated Mar 09, 2020
Comparer dans le client beaucoup de samples d'un coup

#3895 · created Apr 03, 2019 by Mathieu Giraud !-reflexion bio-analyze-more bio-barcodes-umi client-speed client-ugly client-views feature
- 8
updated Dec 13, 2019
Ameliorer l'interaction avec des sample dans la vue timeline

#3896 · created Apr 04, 2019 by Thonier Florian client client-design client-ergonomy client-graph client-views feature
- 1
updated Jun 23, 2020
Cas particulier d'un clone retrouvé dans une analyse

#3897 · created Apr 04, 2019 by Thonier Florian PAN-Necker bio-e-value cpp cpp-cluster cpp-representative
- 2
updated Apr 04, 2019
Erreur dans le calcul de certain coverage

#3898 · created Apr 05, 2019 by Thonier Florian !!-bug cpp cpp-representative
- 1
updated Apr 05, 2019
Absence du nom du fichier dans la page "edit sample"

#3900 · created Apr 05, 2019 by Anne de Septenville
- 0
updated Apr 05, 2019
Faire une première config spike/MRD de test

#3901 · created Apr 08, 2019 by Mathieu Giraud Web 2021.05 Mar 30, 2021 bio-mrd doc next-audio server-config
- 6
updated Apr 23, 2021
Genescan gris, sur les smaller clones, et partiellement coloré, dans le client : fuse.py / distributions

#3902 · created Apr 08, 2019 by Mathieu Giraud !-reflexion PAN-Necker Paris-Pitié client-bar client-virtual-clone ec-ngs next-audio user-request
- CLOSED
- 1
- 15
updated Apr 23, 2020
Plus de clones dans le client : limites ?

#3903 · created Apr 08, 2019 by Mathieu Giraud client
- 11
updated Sep 04, 2019
Clustériser sur la représentative et non pas sur la fenêtre

#3904 · created Apr 17, 2019 by Mathieu Giraud !-reflexion cpp-cluster cpp-representative
- CLOSED
- 2
updated Dec 16, 2020
Stéréotypie CDR3, en général

#3906 · created Apr 18, 2019 by Mathieu Giraud LIL-Lille bio-AA bio-CLL client-warning feature
- 0
updated Nov 20, 2020
Vérifier qu'un pre-process a le bon nombre de fichiers avant de le soumettre/lancer

#3907 · created Apr 25, 2019 by Mikaël Salson server server-ergonomy server-pre-process server-task.py
- CLOSED
- 1
- 5
updated Mar 09, 2020
unordered_map vs map

#3909 · created Apr 26, 2019 by Mathieu Giraud *-go cpp-speed
- 0
updated Apr 26, 2019
Avoir des germline de poulet

#3910 · created May 02, 2019 by Thonier Florian Algo 2021.04 bio-germlines bio-rnaseq bio-species com-first-time-user feature
- CLOSED
- 2
- 8
updated Apr 08, 2021
Fusion de reads avec Flash

#3911 · created May 09, 2019 by Mathieu Giraud Déploiement 2020.06 +-deploy dev-tests-should-get server-config server-docker server-pre-process
- CLOSED
- 1
- 17
updated Mar 20, 2020
Normalized ratios and hiding a locus

#3912 · created May 10, 2019 by Mathieu Giraud client-filter client-normalization doc
- 2
updated Jun 12, 2019
Changement d'API pour V-QUEST

#3913 · created May 13, 2019 by Mikaël Salson #-crisis-prevention *-go client-aligner priority-4-week repseq-IMGT
- CLOSED
- 1
- 0
updated Jun 03, 2019
Release 2019.05

#3914 · created May 13, 2019 by Mathieu Giraud May 17, 2019
- CLOSED
- 18
updated May 17, 2019
Comparer les temps de vidjil-algo à travers les releases, en relançant tout

#3916 · created May 20, 2019 by Mathieu Giraud cpp-speed
- CLOSED
- 1
updated May 07, 2020
lien « to ARResT/AssignSubsets »

#3917 · created May 20, 2019 by Mikaël Salson Lille-LAL-next LIL-Lille bio-CLL client client-ergonomy user-request
- CLOSED
- 1
- 9
updated Oct 04, 2019
Intitulés des colonnes lors d'export csv de multiples samples

#3918 · created May 20, 2019 by Anne de Septenville
- 0
updated May 20, 2019
Déploiement de feature-g/, intégration dans feature-a/

#3919 · created May 23, 2019 by Mathieu Giraud +-deploy bio-germlines dev-ci
- 3
updated Oct 20, 2020
Supprimer les permissions associées quand on supprime une entrée

#3920 · created May 24, 2019 by Mikaël Salson !!-bug !-important #-crisis-prevention *-go server server-permissions
- 0
updated May 24, 2019
Avoir une image OVF/OVA

#3921 · created May 29, 2019 by Thonier Florian BRU-Bruxelles server server-admin server-docker
- CLOSED
- 7
updated Feb 09, 2021
Documenter / déployer la nouvelle normalisation

#3923 · created Jun 05, 2019 by Mathieu Giraud !-reflexion +-deploy bio-mrd bio-spikes client-normalization doc
- 3
updated Jan 19, 2021
app/analyze, mise à jour html et vmi

#3924 · created Jun 05, 2019 by Mathieu Giraud app-analyze vmi-responsive
- 1
updated Jun 05, 2019
No spike normalization and disconnected lines

#3925 · created Jun 07, 2019 by Mathieu Giraud !!-bug Boldrini-Brasil client-graph client-normalization
- 13
updated Jul 15, 2019
Mounted files / network : docker, documentation

#3927 · created Jun 07, 2019 by Mathieu Giraud *-go Boldrini-Brasil LIL-Lille doc server-mounted-files server-upload user-request
- CLOSED
- 5
updated Mar 23, 2020
Monitor et dock

#3928 · created Jun 12, 2019 by Mathieu Giraud server-docker server-monitor
- 0
updated Jun 12, 2019
conf.js : addons

#3929 · created Jun 12, 2019 by Mathieu Giraud *-go Boldrini-Brasil client-custom
- CLOSED
- 1
- 0
updated Dec 10, 2019
Genescan gris : visualisation client

#3930 · created Jun 12, 2019 by Mathieu Giraud !-reflexion client
- CLOSED
- 1
updated Oct 23, 2019
Documenter config.addons

#3931 · created Jun 12, 2019 by Mathieu Giraud client client-custom doc
- 1
updated Jan 15, 2020
Documentation développeur : réorganiser 0 of 3 tasks completed

#3932 · created Jun 12, 2019 by Mathieu Giraud
- 1
updated Aug 02, 2019
Avoir à la fois le nom du fichier et du patient depuis un run

#3934 · created Jun 19, 2019 by Thonier Florian !-reflexion #-certification REN-Rennes client client-ergonomy client-menu feature
- 1
updated Jan 24, 2020
Compare samples : trier par ordre chronologique

#3935 · created Jun 20, 2019 by Mikaël Salson LIL-Lille client-ergonomy server-compare-samples user-request
- 0
updated Jun 20, 2019
Rapports monitor : que sont les graphs « normalization » ?

#3936 · created Jun 20, 2019 by Mikaël Salson !!-bug *-go LIL-Lille client client-normalization client-rapport user-request
- 0
updated Jun 20, 2019
Rapport monitor : mettre les informations de chaque sample

#3937 · created Jun 20, 2019 by Mikaël Salson LIL-Lille bio-mrd client-rapport feature user-request
- 1
updated Jun 21, 2019
Rapport : avoir un champ de remarque/conclusion

#3938 · created Jun 20, 2019 by Mikaël Salson Lille-LAL-next Sep 25, 2019 !-easy LIL-Lille bio-control client-rapport feature support-policy user-request
- CLOSED
- 1
- 2
updated Jan 23, 2020
Ordre des champs du rapport monitor

#3939 · created Jun 21, 2019 by Thonier Florian bikeshedding client client-ergonomy client-rapport
- 1
updated Jan 15, 2021
Tester sur des valeurs les distributions

#3940 · created Jun 21, 2019 by Mathieu Giraud dev-tests-should-get
- 0
updated Jun 21, 2019
Docker : configuration Nginx non modifiable sans reconstruire l'image

#3941 · created Jun 21, 2019 by Mikaël Salson !-reflexion server-config server-docker
- CLOSED
- 1
- 5
updated Jul 05, 2019
override_rep5_rep3 ne devrait pas changer temporairement un objet

#3942 · created Jun 24, 2019 by Mathieu Giraud bio-germlines-pseudo dev-refactor
- 1
updated Jul 08, 2019
Implement null for normalized_reads

#3943 · created Jun 25, 2019 by Mathieu Giraud *-go client client-normalization
- CLOSED
- 2
- 3
updated Jul 15, 2019
Pouvoir calculer des distributions

#3944 · created Jun 27, 2019 by Thonier Florian app-stats feature server server-fuse
- CLOSED
- 3
- 0
updated Sep 10, 2019
Meilleur gestion des clones virtuels

#3945 · created Jun 27, 2019 by Thonier Florian avant-les-congés-2019 !-reflexion client client-graph client-virtual-clone doc
- CLOSED
- 1
- 26
updated Oct 29, 2019
Show normalized_reads field into getHTMLinfo

#3946 · created Jun 27, 2019 by Thonier Florian !-reflexion client client-cloneList client-normalization feature
- 1
updated Mar 23, 2020
Proposer le mécanisme d'autocomplétion dans la recherche des sample sets

#3947 · created Jul 04, 2019 by Mikaël Salson *-go feature server server-ergonomy server-speed
- 1
- 0
updated Nov 20, 2020
distribution, ne pas inclure toutes les distribution dans fuse pour vidjil

#3948 · created Jul 08, 2019 by Thonier Florian
- 0
updated Jul 08, 2019
should-vdj-to-tap : regex insérant une espace avec une alternative

#3949 · created Jul 10, 2019 by Mikaël Salson Algo 2019.10 !!-bug *-go dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Parser de résultats d'IgReC

#3950 · created Jul 10, 2019 by Mikaël Salson *-go dev-tests-curated-vdj feature
- CLOSED
- 1
- 2
updated Jul 11, 2019
Displaying all sub-clones does not work

#3951 · created Jul 11, 2019 by Mikaël Salson !!-bug *-go client client-cloneList client-cluster
- CLOSED
- 1
- 1
updated Oct 11, 2019
should-vdj-to-tap : --ignore_D ne fonctionne pas correctement

#3952 · created Jul 11, 2019 by Mikaël Salson Algo 2019.10 !!-bug dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Refactor repseq_vdj

#3953 · created Jul 11, 2019 by Mathieu Giraud dev-refactor dev-tests-curated-vdj
- 0
updated Jul 11, 2019
Graines différentes pour V et J

#3954 · created Jul 12, 2019 by Mathieu Giraud bio-germlines cpp-aho cpp-heuristic math-stats
- CLOSED
- 1
- 2
updated Mar 26, 2020
Genescan : si le _average_read_length n'est pas fourni le faire sur la longueur de la séquence du clone

#3955 · created Jul 23, 2019 by Mikaël Salson *-go client client-ergonomy client-graph
- 1
updated Oct 23, 2019
un clone ajouté manuellement passe à 100k reads si clusterisé

#3956 · created Jul 23, 2019 by Thonier Florian !!-bug client client-virtual-clone dev-refactor
- 1
updated Jul 23, 2019
Problème d'accès à Vidjil

#3957 · created Jul 30, 2019 by Anne de Septenville !!-bug !!-crisis server
- CLOSED
- 3
updated Aug 20, 2019
Changement de résultat du lien "to IMGT"

#3958 · created Jul 31, 2019 by Anne de Septenville !!-bug client client-aligner repseq-IMGT
- CLOSED
- 6
updated Aug 28, 2019
clones virtuels: gestion des couleurs

#3959 · created Aug 02, 2019 by Thonier Florian !-reflexion client client-color-by client-virtual-clone
- 2
updated Dec 10, 2019
clones virtuels : présence d'une séquence et affichage dans le segmenteur

#3960 · created Aug 02, 2019 by Thonier Florian *-go client client-aligner client-views client-virtual-clone
- 1
- 10
updated Oct 14, 2020
clones virtuels: clusterisation

#3961 · created Aug 02, 2019 by Thonier Florian *-go client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
clones virtuels : getSize

#3962 · created Aug 02, 2019 by Thonier Florian client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
gitlab-ci.yml: utiliser `default:`

#3963 · created Aug 02, 2019 by Mathieu Giraud dev-gitlab priority-1-low
- 0
updated Aug 02, 2019
Running MiXCR through Vidjil

#3964 · created Aug 05, 2019 by Mathieu Giraud Dec 20, 2019 Boldrini-Brasil doc repseq-mixcr repseq-platform user-request
- 8
updated Sep 28, 2020
Utiliser la Notifications API du navigateur web ?

#3965 · created Aug 09, 2019 by Mathieu Giraud !-reflexion client-notifications
- 1
updated Aug 19, 2019
Faire fonctionner MiXCR avec Docker

#3966 · created May 13, 2019 by Mikaël Salson !!-bug doc repseq-mixcr server server-docker server-task.py
- 9
updated Feb 03, 2020
Import natif de AIRR par le client

#3967 · created Aug 19, 2019 by Mathieu Giraud repseq-formats-airr repseq-platform
- 1
updated Feb 23, 2021
Auto-complétion : interdire de cliquer sur "loading"

#3968 · created Aug 19, 2019 by Mathieu Giraud client-autocomplete client-database
- 0
updated Aug 19, 2019
Clones virtuel et liste

#3969 · created Aug 19, 2019 by Mathieu Giraud !-reflexion client-cloneList client-virtual-clone
- 5
updated Oct 29, 2019
fuse.py: quelle séquence conserver ? plus grande, meilleur top, plus de reads ?

#3970 · created Aug 20, 2019 by Thonier Florian !-reflexion Lausanne Paris-Pitié cpp-representative feature server-fuse
- 19
updated Apr 06, 2021
Définition des axes dans fuse.py

#3971 · created Aug 20, 2019 by Mathieu Giraud !-reflexion bikeshedding client-axis server-fuse
- 7
updated Oct 23, 2019
Supprimer une ligne intermédaire du multiupload provoque une erreur

#3972 · created Aug 22, 2019 by Thonier Florian !!-bug REN-Rennes server server-sample-sets server-upload
- CLOSED
- 1
- 4
updated Jun 25, 2020
L'autocomplétion des tags provoque une erreur CORS

#3973 · created Aug 23, 2019 by Mikaël Salson !!-bug client-autocomplete client-database server-database
- CLOSED
- 1
- 1
updated Sep 04, 2019
Indexation de la base de données

#3974 · created Aug 23, 2019 by Mathieu Giraud !-reflexion server-database server-speed
- 1
updated Aug 23, 2019
Lors d'un hover on reparcourt la liste des clones (updateElemStyle)

#3975 · created Sep 04, 2019 by Mikaël Salson !-hard client client-speed client-tags dev-tests-watir
- CLOSED
- 1
- 4
updated Dec 26, 2019
fuse.py: supprimer l'ancien 'distribution' ?

#3976 · created Sep 10, 2019 by Mathieu Giraud dev-dead-code server-fuse
- 1
updated Sep 10, 2019
Lymphotrack retourne un IGH que nous ne trouvons pas

#3977 · created Sep 10, 2019 by Thonier Florian BRU-Bruxelles bio-analyze-more
- 4
updated Sep 10, 2019
Calculer les distributions sur tous les clones, pas sur le top

#3978 · created Sep 10, 2019 by Mathieu Giraud server-fuse
- CLOSED
- 1
- 1
updated Sep 27, 2019
Analyse FAILED de façon répétée

#3979 · created Sep 12, 2019 by Anne de Septenville
- CLOSED
- 7
updated Sep 13, 2019
fuse.py: args.multi dead code ?

#3980 · created Sep 13, 2019 by Mathieu Giraud dev-dead-code server-fuse
- 1
updated Sep 13, 2019
On trouve un clone sur très peu d'identité.

#3981 · created Sep 16, 2019 by Thonier Florian BRU-Bruxelles bio-e-value cpp cpp-filter-fine cpp-finesegmenter cpp-heuristic
- 2
updated Sep 16, 2019
Certains log de preprocess ne sont pas accessibles

#3982 · created Sep 24, 2019 by Thonier Florian !!-bug server server-pre-process server-upload
- 5
updated Mar 02, 2020
Average length différents suivant les points ?

#3983 · created Sep 25, 2019 by Mathieu Giraud !-reflexion server-fuse
- CLOSED
- 1
updated Oct 23, 2019
.rb : clone_in_scatterplot et clones non visibles

#3984 · created Sep 25, 2019 by Mathieu Giraud Oct 16, 2019 dev-tests-watir
- 2
updated Sep 25, 2019
axes.js: renommer "fct" en "get"

#3985 · created Sep 25, 2019 by Mathieu Giraud bikeshedding client-axis
- 0
updated Sep 25, 2019
Arrondis et distributions

#3986 · created Sep 25, 2019 by Mathieu Giraud !-reflexion client-axis client-bar server-fuse
- 3
updated Nov 26, 2019
Un test functional test_22_menu_tutorial échoue de temps en temps

#3987 · created Sep 25, 2019 by Mathieu Giraud !-important dev-tests-watir
- CLOSED
- 1
- 5
updated Oct 07, 2019
Saturation / Peu de place dans la barre des "to"

#3988 · created Sep 25, 2019 by Mathieu Giraud bikeshedding client-design client-ugly
- CLOSED
- 1
- 10
updated Mar 24, 2021