Issues · vidjil / vidjil

New issue

Absence du nom du fichier dans la page "edit sample"

#3900 · opened Apr 05, 2019 by Anne de Septenville
- 0
updated Apr 05, 2019
Faire une première config spike/MRD de test

#3901 · opened Apr 08, 2019 by Mathieu Giraud bio-mrd server-config
- 1
updated Jan 19, 2021
Genescan gris, sur les smaller clones, et partiellement coloré, dans le client : fuse.py / distributions

#3902 · opened Apr 08, 2019 by Mathieu Giraud !-reflexion PAN-Necker Paris-Pitié client-bar client-virtual-clone ec-ngs next-audio user-request
- CLOSED
- 1
- 15
updated Apr 23, 2020
Plus de clones dans le client : limites ?

#3903 · opened Apr 08, 2019 by Mathieu Giraud client
- 11
updated Sep 04, 2019
Clustériser sur la représentative et non pas sur la fenêtre

#3904 · opened Apr 17, 2019 by Mathieu Giraud !-reflexion cpp-cluster cpp-representative
- CLOSED
- 2
updated Dec 16, 2020
Stéréotypie CDR3, en général

#3906 · opened Apr 18, 2019 by Mathieu Giraud LIL-Lille bio-AA bio-CLL client-warning feature
- 0
updated Nov 20, 2020
Vérifier qu'un pre-process a le bon nombre de fichiers avant de le soumettre/lancer

#3907 · opened Apr 25, 2019 by Mikaël Salson server server-ergonomy server-pre-process server-task.py
- CLOSED
- 1
- 5
updated Mar 09, 2020
unordered_map vs map

#3909 · opened Apr 26, 2019 by Mathieu Giraud *-go cpp-speed
- 0
updated Apr 26, 2019
Avoir des germline de poulet

#3910 · opened May 02, 2019 by Thonier Florian bio-germlines bio-rnaseq bio-species com-first-time-user feature
- 2
- 8
updated Dec 04, 2020
Fusion de reads avec Flash

#3911 · opened May 09, 2019 by Mathieu Giraud Déploiement 2020.06 +-deploy dev-tests-should-get server-config server-docker server-pre-process
- CLOSED
- 1
- 17
updated Mar 20, 2020
Normalized ratios and hiding a locus

#3912 · opened May 10, 2019 by Mathieu Giraud client-filter client-normalization doc
- 2
updated Jun 12, 2019
Changement d'API pour V-QUEST

#3913 · opened May 13, 2019 by Mikaël Salson #-crisis-prevention *-go client-aligner priority-4-week repseq-IMGT
- CLOSED
- 1
- 0
updated Jun 03, 2019
Release 2019.05

#3914 · opened May 13, 2019 by Mathieu Giraud May 17, 2019
- CLOSED
- 18
updated May 17, 2019
Comparer les temps de vidjil-algo à travers les releases, en relançant tout

#3916 · opened May 20, 2019 by Mathieu Giraud cpp-speed
- CLOSED
- 1
updated May 07, 2020
lien « to ARResT/AssignSubsets »

#3917 · opened May 20, 2019 by Mikaël Salson Lille-LAL-next LIL-Lille bio-CLL client client-ergonomy user-request
- CLOSED
- 1
- 9
updated Oct 04, 2019
Intitulés des colonnes lors d'export csv de multiples samples

#3918 · opened May 20, 2019 by Anne de Septenville
- 0
updated May 20, 2019
Déploiement de feature-g/, intégration dans feature-a/

#3919 · opened May 23, 2019 by Mathieu Giraud +-deploy bio-germlines dev-ci
- 3
updated Oct 20, 2020
Supprimer les permissions associées quand on supprime une entrée

#3920 · opened May 24, 2019 by Mikaël Salson !!-bug !-important #-crisis-prevention *-go server server-permissions
- 0
updated May 24, 2019
Avoir une image OVF/OVA

#3921 · opened May 29, 2019 by Thonier Florian BRU-Bruxelles server server-admin server-docker
- 6
updated Jun 12, 2019
Documenter / déployer la nouvelle normalisation

#3923 · opened Jun 05, 2019 by Mathieu Giraud !-reflexion +-deploy bio-mrd bio-spikes client-normalization doc
- 3
updated Jan 19, 2021
app/analyze, mise à jour html et vmi

#3924 · opened Jun 05, 2019 by Mathieu Giraud app-analyze vmi-responsive
- 1
updated Jun 05, 2019
No spike normalization and disconnected lines

#3925 · opened Jun 07, 2019 by Mathieu Giraud !!-bug Boldrini-Brasil client-graph client-normalization
- 13
updated Jul 15, 2019
Mounted files / network : docker, documentation

#3927 · opened Jun 07, 2019 by Mathieu Giraud *-go Boldrini-Brasil LIL-Lille doc server-mounted-files server-upload user-request
- CLOSED
- 5
updated Mar 23, 2020
Monitor et dock

#3928 · opened Jun 12, 2019 by Mathieu Giraud server-docker server-monitor
- 0
updated Jun 12, 2019
conf.js : addons

#3929 · opened Jun 12, 2019 by Mathieu Giraud *-go Boldrini-Brasil client-custom
- CLOSED
- 1
- 0
updated Dec 10, 2019
Genescan gris : visualisation client

#3930 · opened Jun 12, 2019 by Mathieu Giraud !-reflexion client
- CLOSED
- 1
updated Oct 23, 2019
Documenter config.addons

#3931 · opened Jun 12, 2019 by Mathieu Giraud client client-custom doc
- 1
updated Jan 15, 2020
Documentation développeur : réorganiser 0 of 3 tasks completed

#3932 · opened Jun 12, 2019 by Mathieu Giraud
- 1
updated Aug 02, 2019
Avoir à la fois le nom du fichier et du patient depuis un run

#3934 · opened Jun 19, 2019 by Thonier Florian !-reflexion #-certification REN-Rennes client client-ergonomy client-menu feature
- 1
updated Jan 24, 2020
Compare samples : trier par ordre chronologique

#3935 · opened Jun 20, 2019 by Mikaël Salson LIL-Lille client-ergonomy server-compare-samples user-request
- 0
updated Jun 20, 2019
Rapports monitor : que sont les graphs « normalization » ?

#3936 · opened Jun 20, 2019 by Mikaël Salson !!-bug *-go LIL-Lille client client-normalization client-rapport user-request
- 0
updated Jun 20, 2019
Rapport monitor : mettre les informations de chaque sample

#3937 · opened Jun 20, 2019 by Mikaël Salson LIL-Lille bio-mrd client-rapport feature user-request
- 1
updated Jun 21, 2019
Rapport : avoir un champ de remarque/conclusion

#3938 · opened Jun 20, 2019 by Mikaël Salson Lille-LAL-next Sep 25, 2019 !-easy LIL-Lille bio-control client-rapport feature support-policy user-request
- CLOSED
- 1
- 2
updated Jan 23, 2020
Ordre des champs du rapport monitor

#3939 · opened Jun 21, 2019 by Thonier Florian bikeshedding client client-ergonomy client-rapport
- 1
updated Jan 15, 2021
Tester sur des valeurs les distributions

#3940 · opened Jun 21, 2019 by Mathieu Giraud dev-tests-should-get
- 0
updated Jun 21, 2019
Docker : configuration Nginx non modifiable sans reconstruire l'image

#3941 · opened Jun 21, 2019 by Mikaël Salson !-reflexion server-config server-docker
- CLOSED
- 1
- 5
updated Jul 05, 2019
override_rep5_rep3 ne devrait pas changer temporairement un objet

#3942 · opened Jun 24, 2019 by Mathieu Giraud bio-germlines-pseudo dev-refactor
- 1
updated Jul 08, 2019
Implement null for normalized_reads

#3943 · opened Jun 25, 2019 by Mathieu Giraud *-go client client-normalization
- CLOSED
- 2
- 3
updated Jul 15, 2019
Pouvoir calculer des distributions

#3944 · opened Jun 27, 2019 by Thonier Florian app-stats feature server server-fuse
- CLOSED
- 3
- 0
updated Sep 10, 2019
Meilleur gestion des clones virtuels

#3945 · opened Jun 27, 2019 by Thonier Florian avant-les-congés-2019 !-reflexion client client-graph client-virtual-clone doc
- CLOSED
- 1
- 26
updated Oct 29, 2019
Show normalized_reads field into getHTMLinfo

#3946 · opened Jun 27, 2019 by Thonier Florian !-reflexion client client-cloneList client-normalization feature
- 1
updated Mar 23, 2020
Proposer le mécanisme d'autocomplétion dans la recherche des sample sets

#3947 · opened Jul 04, 2019 by Mikaël Salson *-go feature server server-ergonomy server-speed
- 1
- 0
updated Nov 20, 2020
distribution, ne pas inclure toutes les distribution dans fuse pour vidjil

#3948 · opened Jul 08, 2019 by Thonier Florian
- 0
updated Jul 08, 2019
should-vdj-to-tap : regex insérant une espace avec une alternative

#3949 · opened Jul 10, 2019 by Mikaël Salson Algo 2019.10 !!-bug *-go dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Parser de résultats d'IgReC

#3950 · opened Jul 10, 2019 by Mikaël Salson *-go dev-tests-curated-vdj feature
- CLOSED
- 1
- 2
updated Jul 11, 2019
Displaying all sub-clones does not work

#3951 · opened Jul 11, 2019 by Mikaël Salson !!-bug *-go client client-cloneList client-cluster
- CLOSED
- 1
- 1
updated Oct 11, 2019
should-vdj-to-tap : --ignore_D ne fonctionne pas correctement

#3952 · opened Jul 11, 2019 by Mikaël Salson Algo 2019.10 !!-bug dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Refactor repseq_vdj

#3953 · opened Jul 11, 2019 by Mathieu Giraud dev-refactor dev-tests-curated-vdj
- 0
updated Jul 11, 2019
Graines différentes pour V et J

#3954 · opened Jul 12, 2019 by Mathieu Giraud bio-germlines cpp-aho cpp-heuristic math-stats
- CLOSED
- 1
- 2
updated Mar 26, 2020
Genescan : si le _average_read_length n'est pas fourni le faire sur la longueur de la séquence du clone

#3955 · opened Jul 23, 2019 by Mikaël Salson *-go client client-ergonomy client-graph
- 1
updated Oct 23, 2019
un clone ajouté manuellement passe à 100k reads si clusterisé

#3956 · opened Jul 23, 2019 by Thonier Florian !!-bug client client-virtual-clone dev-refactor
- 1
updated Jul 23, 2019
Problème d'accès à Vidjil

#3957 · opened Jul 30, 2019 by Anne de Septenville !!-bug !!-crisis server
- CLOSED
- 3
updated Aug 20, 2019
Changement de résultat du lien "to IMGT"

#3958 · opened Jul 31, 2019 by Anne de Septenville !!-bug client client-aligner repseq-IMGT
- CLOSED
- 6
updated Aug 28, 2019
clones virtuels: gestion des couleurs

#3959 · opened Aug 02, 2019 by Thonier Florian !-reflexion client client-color-by client-virtual-clone
- 2
updated Dec 10, 2019
clones virtuels : présence d'une séquence et affichage dans le segmenteur

#3960 · opened Aug 02, 2019 by Thonier Florian *-go client client-aligner client-views client-virtual-clone
- 1
- 10
updated Oct 14, 2020
clones virtuels: clusterisation

#3961 · opened Aug 02, 2019 by Thonier Florian *-go client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
clones virtuels : getSize

#3962 · opened Aug 02, 2019 by Thonier Florian client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
gitlab-ci.yml: utiliser `default:`

#3963 · opened Aug 02, 2019 by Mathieu Giraud dev-gitlab priority-1-low
- 0
updated Aug 02, 2019
Running MiXCR through Vidjil

#3964 · opened Aug 05, 2019 by Mathieu Giraud Dec 20, 2019 Boldrini-Brasil doc repseq-mixcr repseq-platform user-request
- 8
updated Sep 28, 2020
Utiliser la Notifications API du navigateur web ?

#3965 · opened Aug 09, 2019 by Mathieu Giraud !-reflexion client-notifications
- 1
updated Aug 19, 2019
Faire fonctionner MiXCR avec Docker

#3966 · opened May 13, 2019 by Mikaël Salson !!-bug doc repseq-mixcr server server-docker server-task.py
- 9
updated Feb 03, 2020
Import natif de AIRR par le client

#3967 · opened Aug 19, 2019 by Mathieu Giraud repseq-formats-airr repseq-platform
- 1
updated Jan 14, 2020
Auto-complétion : interdire de cliquer sur "loading"

#3968 · opened Aug 19, 2019 by Mathieu Giraud client-autocomplete client-database
- 0
updated Aug 19, 2019
Clones virtuel et liste

#3969 · opened Aug 19, 2019 by Mathieu Giraud !-reflexion client-cloneList client-virtual-clone
- 5
updated Oct 29, 2019
fuse.py: quelle séquence conserver ? plus grande, meilleur top, plus de reads ?

#3970 · opened Aug 20, 2019 by Thonier Florian !-reflexion Lausanne Paris-Pitié cpp-representative feature server-fuse
- 18
updated Dec 11, 2020
Définition des axes dans fuse.py

#3971 · opened Aug 20, 2019 by Mathieu Giraud !-reflexion bikeshedding client-axis server-fuse
- 7
updated Oct 23, 2019
Supprimer une ligne intermédaire du multiupload provoque une erreur

#3972 · opened Aug 22, 2019 by Thonier Florian !!-bug REN-Rennes server server-sample-sets server-upload
- CLOSED
- 1
- 4
updated Jun 25, 2020
L'autocomplétion des tags provoque une erreur CORS

#3973 · opened Aug 23, 2019 by Mikaël Salson !!-bug client-autocomplete client-database server-database
- CLOSED
- 1
- 1
updated Sep 04, 2019
Indexation de la base de données

#3974 · opened Aug 23, 2019 by Mathieu Giraud !-reflexion server-database server-speed
- 1
updated Aug 23, 2019
Lors d'un hover on reparcourt la liste des clones (updateElemStyle)

#3975 · opened Sep 04, 2019 by Mikaël Salson !-hard client client-speed client-tags dev-tests-watir
- CLOSED
- 1
- 4
updated Dec 26, 2019
fuse.py: supprimer l'ancien 'distribution' ?

#3976 · opened Sep 10, 2019 by Mathieu Giraud dev-dead-code server-fuse
- 1
updated Sep 10, 2019
Lymphotrack retourne un IGH que nous ne trouvons pas

#3977 · opened Sep 10, 2019 by Thonier Florian BRU-Bruxelles bio-analyze-more
- 4
updated Sep 10, 2019
Calculer les distributions sur tous les clones, pas sur le top

#3978 · opened Sep 10, 2019 by Mathieu Giraud server-fuse
- CLOSED
- 1
- 1
updated Sep 27, 2019
Analyse FAILED de façon répétée

#3979 · opened Sep 12, 2019 by Anne de Septenville
- CLOSED
- 7
updated Sep 13, 2019
fuse.py: args.multi dead code ?

#3980 · opened Sep 13, 2019 by Mathieu Giraud dev-dead-code server-fuse
- 1
updated Sep 13, 2019
On trouve un clone sur très peu d'identité.

#3981 · opened Sep 16, 2019 by Thonier Florian BRU-Bruxelles bio-e-value cpp cpp-filter-fine cpp-finesegmenter cpp-heuristic
- 2
updated Sep 16, 2019
Certains log de preprocess ne sont pas accessibles

#3982 · opened Sep 24, 2019 by Thonier Florian !!-bug server server-pre-process server-upload
- 5
updated Mar 02, 2020
Average length différents suivant les points ?

#3983 · opened Sep 25, 2019 by Mathieu Giraud !-reflexion server-fuse
- CLOSED
- 1
updated Oct 23, 2019
.rb : clone_in_scatterplot et clones non visibles

#3984 · opened Sep 25, 2019 by Mathieu Giraud Oct 16, 2019 dev-tests-watir
- 2
updated Sep 25, 2019
axes.js: renommer "fct" en "get"

#3985 · opened Sep 25, 2019 by Mathieu Giraud bikeshedding client-axis
- 0
updated Sep 25, 2019
Arrondis et distributions

#3986 · opened Sep 25, 2019 by Mathieu Giraud !-reflexion client-axis client-bar server-fuse
- 3
updated Nov 26, 2019
Un test functional test_22_menu_tutorial échoue de temps en temps

#3987 · opened Sep 25, 2019 by Mathieu Giraud !-important dev-tests-watir
- CLOSED
- 1
- 5
updated Oct 07, 2019
Saturation / Peu de place dans la barre des "to"

#3988 · opened Sep 25, 2019 by Mathieu Giraud bikeshedding client-design client-ugly
- 1
- 9
updated Sep 21, 2020
Afficher des informations sur tout clone

#3989 · opened Oct 01, 2019 by Mathieu Giraud client priority-1-low
- CLOSED
- 1
- 2
updated Nov 04, 2019
Génération automatique de mots de passes

#3990 · opened Oct 03, 2019 by Thonier Florian client client-ergonomy feature
- CLOSED
- 0
updated Oct 03, 2019
Certains caractères des mots de passes bloquent la création de compte

#3991 · opened Oct 03, 2019 by Thonier Florian !!-bug client feature server
- 2
updated Oct 04, 2019
Flash et docker

#3993 · opened Oct 07, 2019 by Mathieu Giraud !-reflexion BRU-Bruxelles LIL-Lille doc server-docker server-hosting server-pre-process
- 5
updated Sep 21, 2020
Mécanisme de sélection incohérent en mode histogramme (bar)

#3994 · opened Oct 08, 2019 by Mikaël Salson *-go client client-ergonomy
- CLOSED
- 1
- 0
updated Nov 04, 2019
Genescan gris : afficher le nombre de clones, à l'intérieur d'un smaller clones, dans l'infoline

#3995 · opened Oct 08, 2019 by Mikaël Salson *-go client client-info client-virtual-clone
- CLOSED
- 5
updated Oct 08, 2019
Genescan gris : la boite de recherche ne fonctionne plus

#3996 · opened Oct 08, 2019 by Mikaël Salson !!-bug *-go client-cloneList client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
Genescan gris : suite à align avec un smaller clone, les boutons « send to » ne fonctionnent plus

#3997 · opened Oct 08, 2019 by Mikaël Salson !!-bug *-go client client-aligner client-virtual-clone
- CLOSED
- 2
updated Oct 17, 2019
Calcul size_distrib : avec ou sans les clones filtrés ?

#3998 · opened Oct 08, 2019 by Mathieu Giraud !-reflexion
- CLOSED
- 2
updated Oct 16, 2019
Genescan gris et autres samples que le numéro 1

#3999 · opened Oct 08, 2019 by Mathieu Giraud
- CLOSED
- 1
updated Oct 15, 2019
updateStats(): dans model.js ?

#4000 · opened Oct 08, 2019 by Mathieu Giraud !-reflexion dev-refactor
- 0
updated Oct 08, 2019
Ne pas ajouter les clones sans séquence dans le segmenteur

#4001 · opened Oct 08, 2019 by Mathieu Giraud
- CLOSED
- 1
updated Oct 08, 2019
Information progressive de timeout et requêtes enchaînées

#4002 · opened Oct 08, 2019 by Mathieu Giraud
- 1
updated Oct 08, 2019
Affichage des clones de distribution dans la liste

#4003 · opened Oct 08, 2019 by Mathieu Giraud client-cloneList
- CLOSED
- 2
updated Oct 24, 2019
Distributions, calculs dans le client

#4004 · opened Oct 08, 2019 by Mathieu Giraud
- 0
updated Oct 08, 2019
Evaluer un fastq en amont des preprocess et analyse

#4005 · opened Oct 09, 2019 by Thonier Florian !-reflexion client cpp feature server server-pre-process
- 3
updated Oct 11, 2019
Améliorer la recherche du motif {WF}GxG sur le CDR3

#4006 · opened Oct 14, 2019 by Thonier Florian bio-AA bio-productivity cpp
- 1
- 11
updated Dec 01, 2020