Issues · vidjil / vidjil

New issue

Réparer une normalization_list affichant la liste des derniers clones normalisés en NORM_EXPECTED

#3666 · created Dec 28, 2018 by Mathieu Giraud *-go client-normalization
- CLOSED
- 2
- 3
updated Jan 16, 2019
clone.getSize2() et normalisation, possible doublon

#3667 · created Dec 28, 2018 by Mathieu Giraud client-grid client-normalization dev-dead-code
- CLOSED
- 2
- 2
updated Jan 16, 2019
Déployer prod-client sur app par gitlab

#3668 · created Dec 31, 2018 by Mathieu Giraud *-go dev-gitlab
- CLOSED
- 0
updated Jan 04, 2019
Impossible de modifier les permissions d'un groupe

#3669 · created Jan 02, 2019 by Mikaël Salson !!-bug !-easy *-go server server-admin server-auth server-ergonomy server-groups server-permissions
- 6
updated Feb 11, 2020
Mettre à jour d3.js

#3670 · created Jan 10, 2019 by Mathieu Giraud *-go client dev-robust
- CLOSED
- 7
updated Jan 29, 2020
QUnit: assert.pushResult

#3671 · created Jan 10, 2019 by Mathieu Giraud *-go dev-tests
- 0
updated Jan 10, 2019
Documenter dans js/lib/info.txt les librairies manquantes

#3672 · created Jan 10, 2019 by Mathieu Giraud *-go dev-robust doc
- 0
updated Jan 10, 2019
Import .tsv AIRR depuis fuse.py

#3673 · created Jan 10, 2019 by Mathieu Giraud Déploiement 2020.06 Dec 20, 2019 !-important *-go repseq-formats-airr repseq-platform server-fuse
- CLOSED
- 1
- 8
updated Sep 28, 2020
Avoir un color by par la evalue

#3674 · created Jan 15, 2019 by Thonier Florian client client-axis client-ergonomy feature
- 1
updated Jan 15, 2019
tools/defs.py : ne plus le versionner (et .sample, docker) 0 of 2 tasks completed

#3676 · created Jan 15, 2019 by Mikaël Salson *-go server-docker server-fuse server-sysadmin
- 1
updated Feb 09, 2021
Axe "qualité moyenne"

#3677 · created Jan 15, 2019 by Mathieu Giraud client client-axis
- 0
updated Jan 15, 2019
axes: pouvoir afficher n'importe quel NumericAxis comme couleur

#3678 · created Jan 15, 2019 by Mathieu Giraud client client-axis client-color-by client-ergonomy repseq-IMGT
- 3
updated Feb 19, 2021
test-browser-unit ne passe pas sur dev

#3679 · created Jan 15, 2019 by Mathieu Giraud dev-gitlab
- CLOSED
- 2
updated Jan 15, 2019
id des groupes, admin des configs

#3680 · created Jan 15, 2019 by Mathieu Giraud *-go bikeshedding priority-1-low server-admin
- 2
updated Jan 15, 2019
test-server-unit ne passe pas sur lego

#3682 · created Jan 15, 2019 by Mathieu Giraud dev-gitlab dev-tests server
- CLOSED
- 1
- 2
updated Jan 17, 2019
Avoir des champs search dans certaines dropdown

#3683 · created Jan 17, 2019 by Thonier Florian !-reflexion client client-accessibility feature server-ergonomy
- 1
updated Feb 28, 2019
Mieux documenter --label

#3684 · created Jan 17, 2019 by Mathieu Giraud Algo 2018.12 *-go Boldrini-Brasil cpp cpp-options doc
- CLOSED
- 3
updated Mar 14, 2019
algo: sortir {} dans le .vidjil quand il n'y a pas de clones

#3685 · created Jan 17, 2019 by Mathieu Giraud !-easy cpp priority-1-low
- 0
updated Dec 03, 2019
Bouton droit sur le client

#3686 · created Jan 17, 2019 by Mathieu Giraud !-reflexion client-ergonomy
- 0
updated Jan 17, 2019
Champ de recherche sur la page d'un sample set : utiliser l'autocomplétion

#3687 · created Jan 17, 2019 by Mikaël Salson !-easy *-go client-autocomplete server server-ergonomy
- 0
updated Feb 28, 2019
Colorer l'icône de tag multiple lorsque c'est pertinent

#3689 · created Jan 22, 2019 by Mathieu Giraud client client-ergonomy priority-1-low
- CLOSED
- 1
- 1
updated Feb 11, 2019
conf.js : Si le message d'alerte est trop long, il n'est pas visible

#3690 · created Jan 28, 2019 by Mikaël Salson !-easy *-go client-ergonomy client-notifications
- 0
updated Jan 28, 2019
Se passer de web2py : py4web, autres ?

#3691 · created Jan 29, 2019 by Mathieu Giraud !-hard !-reflexion server-speed
- 3
updated Jan 27, 2021
Divergence entre vmi.js sur ce dépôt sur le dépôt vmi

#3693 · created Jan 31, 2019 by Mikaël Salson !-important client vmi-responsive
- CLOSED
- 6
updated Feb 13, 2019
Tester Chrome dans notre CI

#3695 · created Jan 31, 2019 by Mathieu Giraud !-important *-go dev-ci dev-tests-watir
- CLOSED
- 1
- 17
updated Mar 13, 2019
Message d'avertissement si la version du browser n'est pas officiellement supportée

#3696 · created Jan 31, 2019 by Mathieu Giraud #-quality *-go client com-first-time-user
- 9
updated Sep 30, 2020
Le top peut-il descendre en dessous de 50 sans l'intervention de l'utliisateur ?

#3697 · created Feb 04, 2019 by Mikaël Salson +-deploy LIL-Lille client client-ergonomy
- CLOSED
- 2
- 11
updated Feb 28, 2019
Docker : Le mot de passe admin web2py n'est pas persistant

#3698 · created Feb 04, 2019 by Mikaël Salson server server-admin server-docker
- CLOSED
- 1
- 7
updated Jun 01, 2020
Chrome : l'export du rapport en offline ne fonctionne pas

#3699 · created Feb 04, 2019 by Mikaël Salson !!-bug client client-rapport
- 1
- 6
updated Feb 13, 2020
FUNCTIONAL_CLIENT_BROWSER_PATH et navigateurs officiellement supportés

#3701 · created Feb 05, 2019 by Mathieu Giraud dev-ci
- CLOSED
- 1
- 1
updated Mar 05, 2019
Plus rien n'apparaît dans la liste

#3702 · created Feb 05, 2019 by Mathieu Giraud LIL-Lille client-cloneList
- CLOSED
- 2
updated Mar 25, 2019
Documenter les variables d'environnement

#3703 · created Feb 05, 2019 by Mathieu Giraud *-go dev-gitlab doc
- 0
updated Feb 05, 2019
css et règles -{moz,webkit}-*

#3704 · created Feb 05, 2019 by Mathieu Giraud client-less-css
- 4
updated Feb 05, 2019
Erreur lors de l'export monitor

#3705 · created Feb 05, 2019 by Thonier Florian !!-bug client client-export client-rapport dev-robust
- CLOSED
- 1
updated Feb 05, 2019
Versionnage des versions de compilateurs utilisés dans l'algo

#3706 · created Feb 05, 2019 by Mathieu Giraud cpp-compiler dev-ci
- CLOSED
- 3
updated Jun 19, 2020
Stocker les tickets à / Accéder aux tickets depuis l'extérieur du Dock

#3707 · created Feb 05, 2019 by Mathieu Giraud *-go server-docker server-monitor
- 1
updated Oct 20, 2020
Less dynamique ?

#3708 · created Feb 05, 2019 by Mathieu Giraud !-reflexion client-less-css wont-fix
- CLOSED
- 0
updated Feb 05, 2019
Tester une version récente de Firefox, dont au moins FF 78 ESR

#3709 · created Feb 05, 2019 by Mikaël Salson Tests-Dev-2021-05 !-important dev-ci dev-tests dev-tests-watir
- 11
updated Apr 19, 2021
Ascenseur de la liste des clones curieux sous FF

#3710 · created Feb 05, 2019 by Mathieu Giraud client-cloneList client-less-css priority-1-low
- 0
updated Feb 05, 2019
Test fonctionnel en echec pourtant validé

#3711 · created Feb 06, 2019 by Thonier Florian !!-bug dev-ci
- 0
updated Feb 06, 2019
Débordement en dehors des div sur les listes patients/runs

#3712 · created Feb 07, 2019 by Thonier Florian client client-design server-ergonomy
- 0
updated Feb 28, 2019
Champs ajout patient/run/sample bloqué lors de l'ajout d'échantillon

#3713 · created Feb 08, 2019 by Thonier Florian !!-bug client client-tags
- 3
updated Feb 08, 2019
Pouvoir supprimer les primers des séquences

#3714 · created Feb 08, 2019 by Thonier Florian LIL-Lille REN-Rennes bio-CLL bio-primers client client-filter feature user-request
- 9
updated Feb 05, 2021
CloneDB : afficher le nombre d'échantillons total

#3715 · created Feb 11, 2019 by Mikaël Salson LIL-Lille app-clonedb client client-ergonomy client-info user-request
- CLOSED
- 1
- 0
updated Nov 21, 2019
CloneDB : afficher les tags

#3716 · created Feb 11, 2019 by Mikaël Salson +-deploy LIL-Lille app-clonedb client client-info user-request
- 1
- 2
updated Dec 03, 2019
CloneDB : les sample sets peuvent être redondants

#3717 · created Feb 11, 2019 by Mikaël Salson LIL-Lille app-clonedb client client-info user-request
- 1
updated Feb 11, 2019
Tutoriel : mettre à jour en ajoutant les nouveautés

#3718 · created Feb 11, 2019 by Mikaël Salson com-first-time-user doc priority-4-week
- CLOSED
- 12
updated Nov 22, 2019
Tutoriel : ajouter les choses spécifiques à la CLL

#3719 · created Feb 11, 2019 by Mikaël Salson com-first-time-user doc patho-ALL patho-LLC
- CLOSED
- 1
updated Mar 15, 2019
CloneDB : lien pour lancer un compare sample

#3720 · created Feb 11, 2019 by Mikaël Salson app-clonedb feature
- 0
updated Feb 11, 2019
Mécanisme plus souple d'affichage dans getHtmlInfo de clone.js

#3721 · created Feb 11, 2019 by Mikaël Salson !-reflexion client client-cloneList client-info
- 1
updated Dec 04, 2020
Les tests serveurs sont cassés

#3722 · created Feb 12, 2019 by Mikaël Salson !!-broken-ci !!-bug !-important dev-ci dev-tests-watir
- CLOSED
- 7
updated Oct 20, 2020
Releases algo sur page gitlab ?

#3723 · created Feb 12, 2019 by Mathieu Giraud com cpp
- 0
updated Feb 12, 2019
Supprimer KMER_INDEX ?

#3724 · created Feb 12, 2019 by Mathieu Giraud !-reflexion cpp cpp-aho wont-fix
- 2
updated Feb 12, 2019
Savoir si une germline est incomplète ou pas ?

#3725 · created Feb 12, 2019 by Mathieu Giraud !-easy bio-germlines-pseudo cpp dev-refactor priority-1-low
- 0
updated Feb 12, 2019
AFFECT_UNKNOWN à la fin des affectations avec Aho et probas

#3726 · created Feb 12, 2019 by Mathieu Giraud bio-e-value cpp-heuristic math-stats
- 0
updated Feb 12, 2019
Utilisation de getS() ou de la graîne avec Aho-Corasick

#3727 · created Feb 12, 2019 by Mikaël Salson Heuristique 2.0 cpp cpp-aho cpp-heuristic dev-refactor
- 4
updated Feb 28, 2019
"Unknown nucleotide" dans les tests should-vdj

#3728 · created Feb 12, 2019 by Mathieu Giraud
- CLOSED
- 2
updated Feb 12, 2019
Libération de la mémoire à la fin de Aho

#3729 · created Feb 12, 2019 by Mathieu Giraud cpp-mem cpp-speed dev-policy
- CLOSED
- 1
- 6
updated Mar 04, 2019
Aho : ne le mettre par défaut qu'à partir d'une certaine taille ?

#3730 · created Feb 12, 2019 by Mathieu Giraud com-first-time-user cpp-speed
- 4
updated May 07, 2020
Add germlines genes pour tous

#3731 · created Feb 13, 2019 by Mathieu Giraud CLL-2018-septembre client-aligner com-vw-vidjil-workshop user-request
- 2
updated Oct 14, 2020
Output files depuis client ?

#3732 · created Feb 13, 2019 by Mathieu Giraud !-reflexion priority-1-low
- 0
updated Feb 13, 2019
Réflexion sur chart.js

#3734 · created Feb 13, 2019 by Mathieu Giraud Feb 13, 2020 !-hard !-reflexion client
- 0
updated Feb 13, 2019
Affichage des différents niveaux de warning

#3735 · created Feb 13, 2019 by Mikaël Salson client client-ergonomy client-warning warning-meta
- 2
updated Feb 03, 2021
FineSegmenter et séquences revcomp ?

#3736 · created Feb 14, 2019 by Mathieu Giraud !-reflexion cpp-finesegmenter dev-refactor priority-1-low
- 1
updated May 28, 2020
Afficher dans la grid des clones en carrés ou autre

#3737 · created Feb 14, 2019 by Mathieu Giraud !-reflexion *-go bikeshedding client-design client-grid client-ugly
- 6
updated Feb 14, 2019
Analyse statique du code C++

#3738 · created Feb 14, 2019 by Mathieu Giraud #-quality cpp dev-code-quality
- 6
updated Aug 27, 2020
Retirer les `using namespace std`

#3739 · created Feb 14, 2019 by Mathieu Giraud !-easy *-go cpp dev-refactor
- 0
updated Feb 14, 2019
Identifier quel est le test should-vdj loupé au milieu d'un lancement groupé

#3740 · created Feb 16, 2019 by Mathieu Giraud dev-ci dev-tests-curated-vdj
- 1
- 1
updated May 20, 2020
redéployer la doc

#3741 · created Feb 18, 2019 by Mathieu Giraud com-first-time-user doc ⟳-recurring-issue
- 3
updated Mar 14, 2019
Des clones ne sont pas rendu sur le graphiques

#3742 · created Feb 22, 2019 by Thonier Florian client client-graph doc
- 5
updated Jul 24, 2020
Pouvoir colorer suivant l'evolution d'un clone

#3743 · created Feb 22, 2019 by Thonier Florian client client-ergonomy client-graph feature
- 2
updated Feb 22, 2019
Avoir un bouton pour generer un mot de passe aléatoire

#3744 · created Feb 22, 2019 by Thonier Florian client client-ergonomy feature server-auth
- 1
updated Nov 13, 2020
Gestion des erreurs client (et serveur ?)

#3745 · created Feb 22, 2019 by Mathieu Giraud !-reflexion #-ethics #-privacy dev-gitlab server-monitor
- 4
updated May 23, 2020
Option to keep only productive recombinations

#3747 · created Feb 26, 2019 by Mathieu Giraud Paris-Pitié THE-Thessaloniki bio-AA
- 0
updated Feb 26, 2019
Read merger: INAB tool ?

#3749 · created Feb 26, 2019 by Mathieu Giraud Paris-Pitié THE-Thessaloniki server-pre-process
- 0
updated Feb 26, 2019
Compare sample ne montre pas l'ensemble des données disponibles

#3750 · created Feb 27, 2019 by Thonier Florian !!-bug server-compare-samples
- CLOSED
- 4
updated Feb 28, 2019
Mettre à jour web2py (tests unitaires serveurs échouent)

#3751 · created Feb 27, 2019 by Mikaël Salson dev-tests server
- 7
updated Oct 20, 2020
Utiliser une version fixe de Web2py

#3752 · created Feb 27, 2019 by Mikaël Salson !-reflexion #-certification dev-policy dev-robust server
- CLOSED
- 1
- 0
updated Feb 27, 2019
Affichage du lien vers l'analyse d'un sample réassocié à un patient/run/set

#3753 · created Feb 28, 2019 by Anne de Septenville Paris-Pitié server server-ergonomy server-sample-sets
- 5
updated Mar 11, 2019
Accès local à db.vidjil.org par conf.js

#3754 · created Feb 28, 2019 by Mathieu Giraud !-important server-hosting
- 21
updated Oct 08, 2019
Les séquences ne sont plus triées par abondance dans le segmenteur

#3759 · created Feb 28, 2019 by Mikaël Salson !!-bug *-go +-working LIL-Lille client client-aligner client-ergonomy dev-tests
- CLOSED
- 1
- 1
updated Feb 28, 2019
Plus de tests should-vdj sur des séquences unexpected

#3760 · created Feb 28, 2019 by Mathieu Giraud *-go bio-germlines-pseudo dev-tests dev-tests-curated-vdj
- 0
updated Feb 28, 2019
Retirer VIDJIL_DEFAULT_OPTIONS

#3762 · created Feb 28, 2019 by Mathieu Giraud cpp dev-tests-should-get
- CLOSED
- 1
- 3
updated Apr 26, 2019
Extraire des tests 'a' des tests 'f' dans un stage gitlab

#3763 · created Feb 28, 2019 by Mathieu Giraud !-easy *-go dev-ci dev-policy dev-tests-should-get
- 3
updated Apr 01, 2019
SampleReads : échantillon aléatoire des reads.

#3764 · created Feb 28, 2019 by Mikaël Salson !-reflexion *-go Paris-Pitié cpp cpp-representative
- CLOSED
- 1
- 6
updated Jul 28, 2020
Tester d'anciens navigateurs sur un slave à part ?

#3765 · created Feb 28, 2019 by Mathieu Giraud !-reflexion dev-ci dev-tests-watir
- CLOSED
- 1
- 0
updated Oct 04, 2019
Release 2019.03 (recopier sur bioinfo)

#3766 · created Mar 01, 2019 by Mathieu Giraud *-go cpp
- CLOSED
- 25
updated May 07, 2020
CloneDB : mise à jour sur vdb et lil

#3767 · created Mar 01, 2019 by Mathieu Giraud Apr 5, 2019 app-clonedb server-hosting
- CLOSED
- 3
updated Feb 26, 2020
Mettre Jenkins sur une autre branche que dev ?

#3768 · created Mar 01, 2019 by Mathieu Giraud dev-ci
- CLOSED
- 4
updated Aug 27, 2020
Jenkins: enlever Vidjil-{coverage,valgrind-unit} ?

#3769 · created Mar 01, 2019 by Mathieu Giraud *-go dev-ci
- CLOSED
- 7
updated Mar 05, 2019
Documenter les besoins mémoire de vidjil-algo

#3770 · created Mar 01, 2019 by Mathieu Giraud cpp-mem cpp-speed dev-ci doc
- 0
updated Mar 01, 2019
vidjil-all-slaves cassé

#3771 · created Mar 04, 2019 by Mathieu Giraud !!-broken-ci
- CLOSED
- 4
updated Oct 20, 2020
-c designations

#3772 · created Mar 05, 2019 by Mathieu Giraud Algo 2018.12 bikeshedding cpp-options doc support-policy
- CLOSED
- 1
- 3
updated Mar 06, 2019
Aho et stanford-no-cd.should-get

#3773 · created Mar 05, 2019 by Mathieu Giraud
- CLOSED
- 1
- 6
updated Mar 05, 2019
Les tests fonctionnels client ne plantent pas lorsqu'un test échoue

#3774 · created Mar 05, 2019 by Mikaël Salson dev-tests dev-tests-watir
- CLOSED
- 8
updated Jun 18, 2020
Vidjil-algo / CLI11: mieux utiliser et homogénéiser le mécanisme d'erreurs

#3775 · created Mar 06, 2019 by Mathieu Giraud cpp priority-1-low
- 1
updated Mar 14, 2019
app/analyze: info sur ligne de commande, version vidjil-algo, log...

#3776 · created Mar 06, 2019 by Mathieu Giraud *-go app-analyze priority-1-low
- 1
updated Mar 15, 2019
app/analyze: séquences de démo

#3777 · created Mar 06, 2019 by Mathieu Giraud *-go app-analyze com-first-time-user
- 0
updated Mar 06, 2019
Déploiement 2019.03, -c designations et options names 1 of 2 tasks completed

#3778 · created Mar 06, 2019 by Mathieu Giraud +-deploy app-analyze server
- CLOSED
- 5
updated Mar 15, 2019
FineSegmenter donne Unexpected +TRBV/+TRBJ+down au lieu de VJ

#3780 · created Mar 06, 2019 by Mathieu Giraud LIL-Immuno bio-e-value bio-germlines-unexpected cpp cpp-finesegmenter
- 7
updated Mar 06, 2019